MXO03141.5prime Sequence
888 bp (727 high quality bases) assembled on 2007-05-24
> MXO03141.5prime
CAGTCGACATGACCGCCAAGCCGAAGTTTGTGTATGAGAAGGATGACCGG
GGCACCATTGGGGAGATAGACGACAACGAGGTGGACCGCATTGCGGAGTG
CTTCAAGGGTCGCAGTCTGTTCATCACAGGAGGCACTGGGTTCCTGGGCA
AGGTCCTGGTCGAGAAGTTGCTGCGTTCGTGCGGTGGCCTAAAGCGCATT
TATCTGCTCATCCGCCCTAAGAAGGGCAAGGATCCTCAGGAGCGCATCAA
GGATATATTCCAGAATGTGCTTTTCGACCAAGTGAAGCAGATGCGTGGCG
AGGAGCACATCCTGCAGCAAGTGGTGGCCATTGCCGGCGACGTCCTTTCG
CCAGGCCTGGGAATCTCCGAGAAAGATCTGGAAACTCTGCGCCAGGAGGT
GTCCATTGTGTACCATTGTGCAGCTACAGTGCGCTTTGATGAACCCCTAC
GAAATGCCGTGTTCATGAACACCCGCGGCACCAAGTACATGCTGGAGCTG
GCTCTGACGTTGAAGCACCTGGACTTCTTCGCCTACTGCTCGACGGCGTA
CTGCCACCTGCACGTTAAGACGCTGTACGAGAAGCCCTACGATCCACCAG
CAGATCCGCACAAGGTGATGCAGGCATGCGAGTGGCTGACGGACGACGAG
GTGGCCACCATCGAGCGCAAGGTGCTCGGGGCTATCCCAAACACGTATGC
CTACACCAAGTCACTGGCTGAGGCGCTGGTGGNTGGAGAAGTTCGAAGAG
CTTCCCGCCGTAATCCTGCGCCCCTCGATCGTCATACCCATCTGGAAGGA
GCCCATTCCCGGCTGGACGGACAACATCAACGGACCCACCGGCCTGCTTA
TCGGAGCCGGAAAGGGTGTCATCCGCACCATGTACTGC
MXO03141.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:32:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1441-PA | 1554 | CG1441-RA | 1..724 | 9..732 | 3620 | 100 | Plus |
| CG1441-PB | 1554 | CG1441-RB | 1..724 | 9..732 | 3620 | 100 | Plus |
| CG1441-PA | 1554 | CG1441-RA | 725..879 | 734..888 | 775 | 100 | Plus |
| CG1441-PB | 1554 | CG1441-RB | 725..879 | 734..888 | 775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1441-RB | 1863 | CG1441-RB | 133..1011 | 9..888 | 4375 | 99.9 | Plus |
| CG1441-RA | 1866 | CG1441-RA | 136..1014 | 9..888 | 4375 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9899940..9900394 | 888..433 | 2230 | 99.8 | Minus |
| 2R | 25286936 | 2R | 9900976..9901142 | 175..9 | 835 | 100 | Minus |
| 2R | 25286936 | 2R | 9900513..9900677 | 433..269 | 825 | 100 | Minus |
| 2R | 25286936 | 2R | 9900776..9900870 | 269..175 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:05:02 has no hits.
MXO03141.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:32:43 Download gff for
MXO03141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1441-PB | 1..879 | 9..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:45 Download gff for
MXO03141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1441-RA | 127..1014 | 1..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:49 Download gff for
MXO03141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1441-RA | 127..1014 | 1..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:49 Download gff for
MXO03141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9900513..9900676 | 270..433 | 100 | <- | Minus |
| 2R | 9900776..9900869 | 176..269 | 100 | <- | Minus |
| 2R | 9900976..9901149 | 1..175 | 97 | | Minus |
| 2R | 9899940..9900393 | 434..888 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:45 Download gff for
MXO03141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5787445..5787898 | 434..888 | 99 | <- | Minus |
| arm_2R | 5788018..5788181 | 270..433 | 100 | <- | Minus |
| arm_2R | 5788281..5788374 | 176..269 | 100 | <- | Minus |
| arm_2R | 5788481..5788654 | 1..175 | 97 | | Minus |
