MXO03142.5prime Sequence
852 bp (798 high quality bases) assembled on 2007-05-24
> MXO03142.5prime
CAGTCGACATGGGTCTGCGATCTGGTGTCTGGGGTTTGGGGGATCTGCCC
ACTTTGCTGCTCACTTCGGTCGCTCCGGCTGCTTTCACTCGACCCAATTC
CAGGGGCAATCTTCTAACCAGTTTAGAAGTGTCCACTTTGGAGCGAGTCA
CGATTTCCTGGACTGGAAAAACACGCGCCCCTCGAGAAAAACGGGGCAGT
GATCTCAGCGATGTGTCCATCATCAAGCGAATGCGTGGAGTGGAAGTTCT
GGCTCTTAGTGTCAACAAGATCAGCACGCTGTCGACCTTCGAGGATTGCA
CCAAACTGCAGGAGCTATATTTGCGCAAGAACAGCATCTCTGACATCAAC
GAGATCGCCTACCTACAAAATCTTCCGAGTCTCAGGAATCTCTGGCTGGA
GGAAAATCCCTGCTGCGAACGAGCGGGTCCCAACTATCGTTCGATCGTAT
TACGCGCCCTGCCGAACCTCAAGAAACTCGACAATGTTGAGGTCACACAG
CAGGAGGTGGAGGATGCGCTGCGTGGAGGCGGAGTCGCCGCACCCGAGGA
CGAGGTCTACGAGGATGCATACCAGCAACAGCAGCAGTCGAGGCGATCAT
CGCCGCAGCAGATACTGCAGCAGCAGCAACACAGCTACCCGCAACACTCG
CCGCCGCCGCAGCAGCAATATCAGCAGCAGCAACAGCAGCAGCAGCAGCA
GCAGCGCGGCTGCACCACTCCCACGAAAGAGGAATACTACCAGTCGGACA
GACCCGCCTACCCGGCGCACTACCGCCACAGCCAGACGGACCTAACCGAG
TGGGAGGAGCACCAGCAGGTGCCCCAGGTGCACCACAATCCCTATGGCAG
CC
MXO03142.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:32:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14995-PB | 1170 | CG14995-RB | 1..844 | 9..852 | 4220 | 100 | Plus |
| CG14995-PD | 1065 | CG14995-RD | 80..739 | 193..852 | 3300 | 100 | Plus |
| CG14995-PC | 1236 | CG14995-RC | 80..621 | 193..734 | 2710 | 100 | Plus |
| CG14995-PA | 1365 | CG14995-RA | 80..618 | 193..731 | 2695 | 100 | Plus |
| CG14995-PC | 1236 | CG14995-RC | 788..910 | 730..852 | 615 | 100 | Plus |
| CG14995-PA | 1365 | CG14995-RA | 917..1039 | 730..852 | 615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14995-RH | 1870 | CG14995-RH | 35..878 | 9..852 | 4220 | 100 | Plus |
| CG14995-RG | 3229 | CG14995-RG | 1715..2374 | 193..852 | 3300 | 100 | Plus |
| CG14995-RD | 2559 | CG14995-RD | 908..1567 | 193..852 | 3300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4097506..4097804 | 732..434 | 1495 | 100 | Minus |
| 3L | 28110227 | 3L | 4100995..4101180 | 194..9 | 930 | 100 | Minus |
| 3L | 28110227 | 3L | 4098026..4098201 | 433..258 | 880 | 100 | Minus |
| 3L | 28110227 | 3L | 4095754..4095876 | 852..730 | 615 | 100 | Minus |
| 3L | 28110227 | 3L | 4100780..4100846 | 259..193 | 335 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:57:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6717..6865 | 556..704 | 303 | 70.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6801..6977 | 571..743 | 281 | 63.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2338..2469 | 571..705 | 272 | 69.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6765..6954 | 571..758 | 243 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2442 | 571..705 | 242 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2374..2514 | 571..705 | 230 | 67.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2815..3024 | 571..768 | 219 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2359..2530 | 571..726 | 211 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2763..2889 | 570..702 | 199 | 66.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6837..7088 | 571..825 | 142 | 57.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1074..1149 | 571..646 | 136 | 67.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1089..1157 | 571..638 | 108 | 63.8 | Plus |
MXO03142.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:32:48 Download gff for
MXO03142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14995-PB | 1..844 | 9..852 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:08 Download gff for
MXO03142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14995-RH | 28..878 | 1..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:11 Download gff for
MXO03142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14995-RH | 28..878 | 1..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:11 Download gff for
MXO03142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4100996..4101185 | 1..193 | 97 | | Minus |
| 3L | 4095754..4095874 | 732..852 | 100 | <- | Minus |
| 3L | 4097507..4097804 | 434..731 | 100 | <- | Minus |
| 3L | 4098026..4098199 | 260..433 | 100 | <- | Minus |
| 3L | 4100780..4100845 | 194..259 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:08 Download gff for
MXO03142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4095754..4095874 | 732..852 | 100 | <- | Minus |
| arm_3L | 4097507..4097804 | 434..731 | 100 | <- | Minus |
| arm_3L | 4098026..4098199 | 260..433 | 100 | <- | Minus |
| arm_3L | 4100780..4100845 | 194..259 | 100 | <- | Minus |
| arm_3L | 4100996..4101185 | 1..193 | 97 | | Minus |
