MXO03143.5prime Sequence
882 bp (775 high quality bases) assembled on 2007-05-24
> MXO03143.5prime
CAGTCGACATGCTAAACAGGTTCATTGGTTTATCGGCTGCGATCGTGGGT
CGGAGCAGTCGGATCAGCGGCTTTCCGTTCTCGCCGCTCCTTAAAGCTGG
AAATCAAAGCCAGAATCGCACCATGTCCGCTGGCAAGGCTTTCAAGGTCC
TGGTGACACATCCCGAGGTTCCCCAGGAGGGCATTGATCTGCTGAAGGAG
AACTGCGAGATCGTCCAGGTGCAGAGTGTTCCCATCAACCGGGCGGAGCT
GCTGGAGAAAATCCGTGGCGTGGATGGCGTTCTCTGGGGTGGACACGAAC
CCCTCAATGCCGAGGCCCTCGATGCTGCCGGTCCCCAGCTGAAATCCATC
TCCACCATGTCGGCGGGAATCGACTACGTCGATGTGCCGGAGGTAAAGAG
ACGTAAGATCCCGCTGGGACACACGCCCACCGTTCTCAACACCGCCGTGG
CCGATTTGGCAGTGGGTCTCCTGATCGCCGCCAGTCGCCGTTTTCACGAG
GGTCGCAAGACCATCGACAATGACAAGTGGGAAAACTACCATCTTAACTG
GCTGTTGGGCCAGGATATTCGTGATTCCACCGTGGGATTCTACGGCTTTG
GAGGCATTGGTCAGGCTATTGCCAAGCGTTTGTCTGGATTCGACATTGAC
AAGGTGCTGTACACCACCCGTCGTCGTGTTCACAAGGAGATCGAGGAGGA
GTTCAATGCCAAGAAAGTTGACTTCGATACCCTTCTGGCCGAGAGTGACT
TCGTAGTGATCGCTTCTCCTTTGACGAAGGACACACAGGGCGTCTTTAAT
GCCACCGCCTTCACAAGATGAAGCAGACTGCTGTGCTGGTTAACATTGCC
AGGGGCAAAATCGTCAACCAGGATGACCTCTA
MXO03143.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:32:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9331-PC | 1095 | CG9331-RC | 1..805 | 9..813 | 4025 | 100 | Plus |
| CG9331-PA | 1095 | CG9331-RA | 92..805 | 100..813 | 3570 | 100 | Plus |
| CG9331-PE | 1101 | CG9331-RE | 99..811 | 101..813 | 3565 | 100 | Plus |
| CG9331-PD | 981 | CG9331-RD | 1..691 | 123..813 | 3455 | 100 | Plus |
| CG9331-PB | 981 | CG9331-RB | 1..691 | 123..813 | 3455 | 100 | Plus |
| CG9331-PC | 1095 | CG9331-RC | 806..875 | 813..882 | 350 | 100 | Plus |
| CG9331-PA | 1095 | CG9331-RA | 806..875 | 813..882 | 350 | 100 | Plus |
| CG9331-PE | 1101 | CG9331-RE | 812..881 | 813..882 | 350 | 100 | Plus |
| CG9331-PD | 981 | CG9331-RD | 692..761 | 813..882 | 350 | 100 | Plus |
| CG9331-PB | 981 | CG9331-RB | 692..761 | 813..882 | 350 | 100 | Plus |
| CG31674-PA | 984 | CG31674-RA | 419..497 | 538..616 | 220 | 91.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9331-RI | 1550 | CG9331-RI | 347..1221 | 9..882 | 4350 | 99.9 | Plus |
| CG9331-RH | 1413 | CG9331-RH | 210..1084 | 9..882 | 4350 | 99.9 | Plus |
| CG9331-RM | 1827 | CG9331-RM | 624..1498 | 9..882 | 4350 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20825667..20826087 | 100..520 | 2105 | 100 | Plus |
| 2L | 23513712 | 2L | 20826633..20826970 | 521..857 | 1640 | 99.7 | Plus |
| 2L | 23513712 | 2L | 20831946..20832287 | 517..857 | 520 | 77.5 | Plus |
| 2L | 23513712 | 2L | 20825421..20825512 | 9..100 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:48:40 has no hits.
MXO03143.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:32:53 Download gff for
MXO03143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-PC | 1..874 | 9..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:04 Download gff for
MXO03143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-RC | 318..1191 | 9..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:42 Download gff for
MXO03143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-RM | 624..1497 | 9..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:42 Download gff for
MXO03143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20825421..20825512 | 9..100 | 100 | -> | Plus |
| 2L | 20826633..20826970 | 521..857 | 99 | -> | Plus |
| 2L | 20827032..20827055 | 858..881 | 100 | | Plus |
| 2L | 20825668..20826087 | 101..520 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:04 Download gff for
MXO03143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20825421..20825512 | 9..100 | 100 | -> | Plus |
| arm_2L | 20825668..20826087 | 101..520 | 100 | -> | Plus |
| arm_2L | 20826633..20826970 | 521..857 | 99 | -> | Plus |
| arm_2L | 20827032..20827055 | 858..881 | 100 | | Plus |
