MXO03146.5prime Sequence
910 bp (763 high quality bases) assembled on 2007-05-24
> MXO03146.5prime
CAGTCGACATGACGTTCAAATTGCGCTTAGCCTCGGTCTTCGCCAATCCG
AATTGTCTATTGGGACGCAGGATTCGCCACCAGTTTCTGGTCACCCTGCT
GCTGAACATAGCTACCTTCTCCCATGGCCTGGGCGTGGGTTGGATGTCGC
CGGTGATGAGGGACCTGCAGACCGATGAGTCGCCCCTTGATTTTCCCGTC
CTCGTGAGCCAGGTGTCCTGGATCGGATCGCTCGTGGGCATTGGCAGTGT
GATGGGCAATCTGATCGCCGGATTACTCATGGATCGCATTGGTCGCAAGA
TGGTCCTTTTCTTCATTGCGATTCCCTATACGACCTTTTGGTGCCTGATT
TACTTCGTCCAAAGTGTGGAGTTCCTGTACATCGGACGACTGATGGCCGG
CATAACTGGTGGTGCCTGCTACGTCGTCCTTCCGACCTTCATAAGCGAAA
TCGCCGACACCAATGTTCGCGGTCGCCTAGGCTCCATTATCTTACTATCG
GTGAACACGGGTGTTTTGGCGGGCTATATAGTGTCCACGAGAGTGGATTA
CTTTACGTCTCCCCCGTTCATCATCGGGCTGCCCGTCTGTTATTTTATCT
GCAACTTCCTCATTCCGGAAACCCCACATCACCTAGTTCGCAAGGGAAAA
TTCGAAGCGGCCAAGAGGTCGTTCATGTTCTACAAAAACATCAGGAAAAA
TGACATCAAGGCTGAGGACGAGTTCGAAGAGATGAAGTATCTCCTTATTA
AGGAGCAGACGGAGAANGCCAAGTCCTTCGACTACAGAGATTTCATAACC
AGACCTGCATTTAAGGCCTACGCTTCTGCCGCTGTCCTGCTTATTAGCAA
TCAATTCAGTGCCAGTTTTTGTGTGACCACCTACTTGGCGGACGTCTTTG
CCGCATCCAC
MXO03146.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:33:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3285-PA | 1401 | CG3285-RA | 1..900 | 9..908 | 4481 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3285-RB | 1595 | CG3285-RB | 35..935 | 8..908 | 4494 | 99.9 | Plus |
| CG3285-RA | 1631 | CG3285-RA | 35..935 | 8..908 | 4494 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3331612..3331943 | 464..795 | 1649 | 99.7 | Plus |
| 2L | 23513712 | 2L | 3331118..3331347 | 103..332 | 1150 | 100 | Plus |
| 2L | 23513712 | 2L | 3331413..3331544 | 332..463 | 660 | 100 | Plus |
| 2L | 23513712 | 2L | 3332003..3332115 | 796..908 | 565 | 100 | Plus |
| 2L | 23513712 | 2L | 3330962..3331056 | 8..102 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:26:24 has no hits.
MXO03146.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:33:03 Download gff for
MXO03146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3285-PA | 1..901 | 9..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:38 Download gff for
MXO03146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3285-RA | 26..936 | 1..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:33 Download gff for
MXO03146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3285-RA | 26..936 | 1..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:33 Download gff for
MXO03146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3330953..3331056 | 1..102 | 97 | -> | Plus |
| 2L | 3331118..3331347 | 103..332 | 100 | -> | Plus |
| 2L | 3331414..3331544 | 333..463 | 100 | -> | Plus |
| 2L | 3331612..3331943 | 464..795 | 99 | -> | Plus |
| 2L | 3332003..3332116 | 796..910 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:38 Download gff for
MXO03146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3330953..3331056 | 1..102 | 97 | -> | Plus |
| arm_2L | 3331118..3331347 | 103..332 | 100 | -> | Plus |
| arm_2L | 3331414..3331544 | 333..463 | 100 | -> | Plus |
| arm_2L | 3331612..3331943 | 464..795 | 99 | -> | Plus |
| arm_2L | 3332003..3332116 | 796..910 | 99 | | Plus |
