MXO03148.5prime Sequence
900 bp (769 high quality bases) assembled on 2007-05-24
> MXO03148.5prime
CAGTCGACATGGCGGGAATGAATGAGTACTCTAGCCTAAAATTTCAAGCG
GAGTATGAAACGCACGATGATCACCTGGGCAAGGAGCATCGGACTGGGGA
CCGGGATCAACATTTACCCGTGACCTATGGCCCTAGCAAACACTTGGGAA
GCAGCCTTGAAGAGCGCGAGAAGGCGATTGTGGACGTCGTCGGCGTACAG
TGGGTCTCCCTGGTCACCGAGAACCTGCTTAGCCATCCGTTTGTGGTGCT
GCGCCGCCAGTGCCAGGTGTACAATGCCTCGAGACGCTATCATTTGCATC
CCTTTCAGCTTCTGCCCAGCATCGTCCACCTGCACAGAAGGCAGGGACTG
ACGACCCTGTGGAAGGGCGTGGGCAGCTGCCTACTGGTGCGCGGCATGAC
GCTGGCCATCGACGACTTTATCTCGAAGGTGACCAGCTGGCCCAAGGATG
TGAATAGTCGCACCACGCTAAAGCGTTTCGGACAGCATCTCCTGCTCAAA
TGCATAAGTATCGGCCTGGTGGTGCCCTTCTATGCAGCTTCTCTCGTCGA
AACGGTGCAGAGTGATATTGCCAGCGAGAAACCCGGTCTATTCGATGTAT
TCCGGGAGGGAAGTCTGCGCTTGTTTTATTGGAGCTCTCCGCAAAAGGGC
CGTATGCTACCAGCCTGGGCTCTAATCGGGCCAAGTGTCTCCTTTGGCAT
CACCAAGTATCTGTTTAATCTCGTGATACGGGGCGTGTCCTCACGCATAA
TGCGGCTTCGTATAAAGAATTCCCAGGACGGCCAGGGTGGAAAGTATCAG
GACACCACGCTGGAACAACAGAATGCGGACATCTATGCCAGCCTTATTGC
TATCATAACCACTGAGGTCATGTTCTTCCCGTTCGAAACGATTCTACACC
MXO03148.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:33:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8931-PA | 1266 | CG8931-RA | 1..892 | 9..900 | 4460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8931-RA | 1454 | CG8931-RA | 149..1040 | 9..900 | 4460 | 100 | Plus |
| CG5755-RA | 1553 | CG5755-RA | 395..962 | 186..753 | 440 | 72.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15984593..15984991 | 502..900 | 1995 | 100 | Plus |
| X | 23542271 | X | 15984188..15984538 | 152..502 | 1755 | 100 | Plus |
| X | 23542271 | X | 15984014..15984127 | 41..154 | 570 | 100 | Plus |
| 2L | 23513712 | 2L | 18096962..18097529 | 186..753 | 425 | 71.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:18:25 has no hits.
MXO03148.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:33:12 Download gff for
MXO03148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8931-PA | 1..892 | 9..900 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:14 Download gff for
MXO03148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8931-RA | 145..1040 | 2..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:24 Download gff for
MXO03148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8931-RA | 145..1040 | 2..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:24 Download gff for
MXO03148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15984014..15984127 | 41..154 | 100 | -> | Plus |
| X | 15984191..15984538 | 155..502 | 100 | -> | Plus |
| X | 15984594..15984991 | 503..900 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:14 Download gff for
MXO03148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15878047..15878160 | 41..154 | 100 | -> | Plus |
| arm_X | 15878224..15878571 | 155..502 | 100 | -> | Plus |
| arm_X | 15878627..15879024 | 503..900 | 100 | | Plus |
