MXO03149.5prime Sequence
818 bp (806 high quality bases) assembled on 2007-05-24
> MXO03149.5prime
CAGTCGACATGGGCTCGTTAACGGGAATGCATATATCACACTGGTTGCTG
TGGACGTGCCTGCTGCTCCTTGGCGCAGCGGGAACGGATGCGTCAGTTGA
CTACTTTGCCTATGCTCCCGGTAAGTGCGAAGTGTCCATTTCGGATGTAA
TCCAAGGCATGATTACCACTGAGGCTGGCGTCATCCTCGGAAGGCCCCGT
CCTTCGCAAACAAAGCTGCTGCGGTACGATCTTTATACGCCCCTCAATCC
GGAGGAGCGTCAACTGCTGCGACCAGGAGATCTGACCATGCTAAGGAACT
CGCACTTCAATCCGAAATGGCCAGTTAGGGTCTCCATTCATGGCTGGGCG
GGAAAGAGTGTCACCTGCTCGAATGCTGCCATCAAGGATGCCTACCTGTC
CCGGGGCAATTACAACGTCATAATTCTGGACTGGAGTCGCCAGTCGTTGG
ACATCAGCTATCCACGTGTGTCTAAGCAGCTTCCGTCGATAGCTGCCAAT
GTGGCCAAAATGTTGCGGTTTCTTCATGACAACACAGGAGTTCCCTACGA
GCAAATCTATATGATTGGGCACAGCGCCGGCAGTCACATCTCTGGATTGA
CTGGAAAGCTGTTAAGGCCGCATCGCCTTGGTGCTATTTTCGCCTTGGAT
CCCGCTGGTCTCACTCAACTCAGCCTGGGACCCGAAGAGAGGCTGGACGT
CAACGATGCCCTGTATGTGGAGTCAATTCACACGGATCTAACGCTGCTCG
GCAATCCGAGTACTAAGCTCAGTCATGCCTCCTTCTTTGCCAACTGGGGC
CTCGGGCAGCCACATTGT
MXO03149.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:33:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4979-PA | 1164 | sxe2-RA | 1..810 | 9..818 | 4050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sxe2-RB | 1627 | CG4979-RB | 273..1082 | 9..818 | 4050 | 100 | Plus |
| sxe2-RA | 1583 | CG4979-RA | 229..1038 | 9..818 | 4050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16086184..16086677 | 325..818 | 2470 | 100 | Plus |
| 3R | 32079331 | 3R | 16085878..16086122 | 85..329 | 1225 | 100 | Plus |
| 3R | 32079331 | 3R | 16085733..16085808 | 9..84 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:31:14 has no hits.
MXO03149.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:33:18 Download gff for
MXO03149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4979-PA | 1..810 | 9..818 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:38 Download gff for
MXO03149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sxe2-RA | 225..1038 | 3..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:19 Download gff for
MXO03149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sxe2-RA | 225..1038 | 3..818 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:19 Download gff for
MXO03149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16085729..16085808 | 3..84 | 95 | -> | Plus |
| 3R | 16085878..16086121 | 85..328 | 100 | -> | Plus |
| 3R | 16086188..16086677 | 329..818 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:38 Download gff for
MXO03149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11911451..11911530 | 3..84 | 95 | -> | Plus |
| arm_3R | 11911600..11911843 | 85..328 | 100 | -> | Plus |
| arm_3R | 11911910..11912399 | 329..818 | 100 | | Plus |
