MXO03150.5prime Sequence
829 bp (827 high quality bases) assembled on 2007-05-24
> MXO03150.5prime
CAGTCGACATGGAGGAGCTGCAGGATGCCAGCATCCACCATATGACCGCA
AAGGTAATCGCGGCCATCAAGAACACTAAGAGCTACGAGCCCATCTACAA
GGAGCTGCAGAAGCTGGTCTGCAATCCCAGCGTAGATACTCACGATATGC
GCAACACCCTCGAGGATGCCATCAAGAGCGCCGGACTGGAGACGGAGATC
CGGAATATTGTCTACAACCTGGTCCGCACGCGGCTGTCGAAAACAGATGA
CAAAAACCTGGCCAACAAACAGGGAGCGAAACCCACCGTTAGTGATCCAC
TTGGATATTTAAAAAGAGCTGGTGTGCTTTGGGATCGAAGGGTTAGGAAG
AGTTTGAATGCCATGTGTACAGAGCTGAAGGTTCCATTGCATGGACAACC
AAGGATCAGTGCTGATCGCGAGGACTTTATGGCCAAGTGGAACGAACTGA
GCAACTACAATATGGATCTGGCCAACTATAGGCCTGTTTACGCTCCAAAG
GATTTACTGGAGGTGCTACTCTCGCTAAAAGGACCCGCCAAAACCACTGA
AAATACAGATCAAATCCCCCAATGGGAGTTCTCCCACATTGCACTACCTG
TGAAAAATCTTTTCGAGCTGCGTGCCCACTACGCGGATCTGCTGCGAAGT
GATAGCTATTTGGGAGTGCCGGATCTTACGGTTCAGTGCCAGAGGATTCT
GGAGGCCAGGCATGCGCCCATGTGCCAGCAGTTTCTGAAGAAGGGCTGCA
CACCCGCACCTTATAGGGGAGCTCTCTGGGCTTCGGTGCTGGACAGCAAG
CTACATGACTACGATATTGAGTACTGGCA
MXO03150.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:33:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7742-PA | 1530 | CG7742-RA | 1..821 | 9..829 | 4105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7742-RC | 1894 | CG7742-RC | 266..1091 | 4..829 | 4115 | 99.9 | Plus |
| CG7742-RD | 2119 | CG7742-RD | 491..1316 | 4..829 | 4115 | 99.9 | Plus |
| CG7742-RA | 1768 | CG7742-RA | 140..965 | 4..829 | 4115 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5214317..5214591 | 278..4 | 1360 | 99.6 | Minus |
| 2L | 23513712 | 2L | 5213387..5213640 | 813..560 | 1270 | 100 | Minus |
| 2L | 23513712 | 2L | 5213837..5214024 | 465..278 | 940 | 100 | Minus |
| 2L | 23513712 | 2L | 5213690..5213784 | 559..465 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:05:14 has no hits.
MXO03150.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:33:23 Download gff for
MXO03150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7742-PA | 1..820 | 9..828 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:50 Download gff for
MXO03150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7742-RA | 137..964 | 1..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:51 Download gff for
MXO03150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7742-RA | 137..964 | 1..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:51 Download gff for
MXO03150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5213317..5213332 | 813..828 | 100 | <- | Minus |
| 2L | 5213388..5213640 | 560..812 | 100 | <- | Minus |
| 2L | 5213690..5213783 | 466..559 | 100 | <- | Minus |
| 2L | 5213837..5214023 | 279..465 | 100 | <- | Minus |
| 2L | 5214317..5214592 | 1..278 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:50 Download gff for
MXO03150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5213317..5213332 | 813..828 | 100 | <- | Minus |
| arm_2L | 5213388..5213640 | 560..812 | 100 | <- | Minus |
| arm_2L | 5213690..5213783 | 466..559 | 100 | <- | Minus |
| arm_2L | 5213837..5214023 | 279..465 | 100 | <- | Minus |
| arm_2L | 5214317..5214592 | 1..278 | 98 | | Minus |
