MXO03151.5prime Sequence
838 bp (781 high quality bases) assembled on 2007-05-24
> MXO03151.5prime
CAGTCGACATGGCCTTCCGCTCGGTGGTTACGATGGAGAAGCCGCTCCAG
CACATTTCGCTGACGGACTGGTATGCCCGTGTGAACCAGATGCGGAATGT
GGCGGATGCCCGGAGGTCGGACGCCTTCGCCATCCGCCACTCATCCCGAT
CCTTGAGGAACGAGACGCGGATCGAGGGCGACTGGGCCAACTACGAGACA
AATGAGGCTCTGACCGATCGCATCTCCGAGTTGAATCGCTGGCGGGATAT
CATTTCCAAGTCCTTCGAGAAGATCGAGCGCGAGATATTCATGCTGCAGG
AGGAGAAGAATGCCACGGAACGGGAGCTGGAGGCGTTGGCAGGTCCGATT
TCCGTGATAGCCGAGTGCCTGACCATAAGGGACGGTCGCCTCGGATCGGA
GATCACCTACGATGAGGCCGACACCGAGATCAAGAACGAACTGGTCGTGC
TGGAGAACAACCAGCGCCTGCTGGCCGATCGATGCCAGAAGGCGTGGGAG
AAGCTCAATCGTCTGGAGGAAGTGCGCTTCAAGATCGGCCTGGAGATCGA
GTTCAAGGTGGAGGCGGTGCAGCTGGACAACTCACAGCTGGCGCTCGATC
GCAACTCGGCCAATATCTCATACAAGCCGGATCCCACGAGAAATCCCAAG
AACTCCTGTTCCTACGAGTCCTGGCTGGAGAACGTGAAGAACATAAAGCT
GCTGGCGGAGAATGAGCTGGCCGACACGTACGCCATTCGGGAGGCTTTGT
TCGTGTGCCGCGAAAAGGCGCGCAACATGCTGCAGTCGCAGCAGGAGCGG
GCGGAGCACACCATCCGCAAACGGATCTTCGAGACGCA
MXO03151.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:33:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3085-PA | 1299 | CG3085-RA | 1..830 | 9..838 | 4150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3085-RB | 1749 | CG3085-RB | 268..1097 | 9..838 | 4150 | 100 | Plus |
| CG3085-RA | 1670 | CG3085-RA | 189..1018 | 9..838 | 4150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23075530..23075962 | 220..652 | 2165 | 100 | Plus |
| 2R | 25286936 | 2R | 23075255..23075466 | 9..220 | 1060 | 100 | Plus |
| 2R | 25286936 | 2R | 23076020..23076205 | 653..838 | 930 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:27:00 has no hits.
MXO03151.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:33:28 Download gff for
MXO03151.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3085-PA | 1..829 | 9..837 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:54 Download gff for
MXO03151.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3085-RA | 185..1017 | 1..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:53 Download gff for
MXO03151.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3085-RA | 185..1017 | 1..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:53 Download gff for
MXO03151.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23075251..23075466 | 1..220 | 98 | -> | Plus |
| 2R | 23075531..23075962 | 221..652 | 100 | -> | Plus |
| 2R | 23076020..23076204 | 653..837 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:54 Download gff for
MXO03151.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18962774..18962989 | 1..220 | 98 | -> | Plus |
| arm_2R | 18963054..18963485 | 221..652 | 100 | -> | Plus |
| arm_2R | 18963543..18963727 | 653..837 | 100 | | Plus |
