MXO03153.5prime Sequence
838 bp (796 high quality bases) assembled on 2007-05-24
> MXO03153.5prime
CAGTCGACATGGCCACATTCACACAGGACGAGATCGACTTCCTGCGCAGC
CATGGCAACGAGCTGTGTGCCAAGACCTGGCTGGGATTGTGGGATCCGAA
GCGGGCTGTGCACCAGCAGGAGCAGCGCGAACTGATGATGGACAAGTATG
AGCGGAAGCGATACTACCTGGAGCCGGCCAGTCCTCTTAAGTCGCTGGCC
AATGCGGTCAACCTGAAGTCGTCTGCTCCGGCGACGAACCACACTCAGAA
TGGCCACCAAAATGGGTATGCCAGCATCCATTTGACGCCTCCTGCTGCCC
AGCGGACCTCGGCCAATGGATTGCAGAAGGTGGCCAACTCGTCGAGTAAC
TCTTCTGGAAAGACCTCATCCTCGATCAGTAGGCCACACTATAATCACCA
GAACAACAGCCAAAACAACAATCACGATGCCTTTGGCCTGGGTGGCGGAT
TGAGCAGCCTGAACAGCGCCGGTTCCACATCCACTGGAGCTCTTTCCGAC
ACCAGCAGTTGTGCTAGCAATGGCTTCGGTGCGGACTGCGACTTTGTGGC
TGACTTTGGCTCGGCCAACATTTTCGACGCCACATCGGCGCGTTCCACAG
GATCGCCGGCGGTGTCGTCCGTGTCCTCAGTGGGTTCCAGCAATGGCTAC
GCCAAGGTGCAGCCCATCCGGGCAGCTCATCTCCAGCAGCAACAGCAGTT
GCAGCAGCAGCTGCATCAGCAGCAGCTCCTCAATGGCAATGGTCATCAGG
GCACTGAGAACTTTGCCGACTTCGATCACGCTCCCATCTACAATGCAGTG
GGTGCTCCCTTGCAGAACGGCCATACGACCAGTCCGCC
MXO03153.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:33:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3365-PB | 1809 | drongo-RB | 211..1040 | 9..838 | 4150 | 100 | Plus |
| CG3365-PA | 1599 | drongo-RA | 1..830 | 9..838 | 4150 | 100 | Plus |
| CG3365-PC | 1344 | drongo-RC | 1..830 | 9..838 | 4150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| drongo-RI | 2625 | CG3365-RI | 1214..2043 | 9..838 | 4150 | 100 | Plus |
| drongo-RH | 3518 | CG3365-RH | 1214..2043 | 9..838 | 4150 | 100 | Plus |
| drongo-RC | 2672 | CG3365-RC | 371..1200 | 9..838 | 4150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 836544..837338 | 803..9 | 3975 | 100 | Minus |
| 2L | 23513712 | 2L | 835511..835548 | 838..801 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:31:27 has no hits.
MXO03153.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:33:40 Download gff for
MXO03153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3365-PC | 1..830 | 9..838 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:45 Download gff for
MXO03153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drongo-RC | 364..1200 | 1..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:26 Download gff for
MXO03153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drongo-RC | 364..1200 | 1..838 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:26 Download gff for
MXO03153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 835511..835547 | 802..838 | 100 | <- | Minus |
| 2L | 836546..837342 | 1..801 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:45 Download gff for
MXO03153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 835511..835547 | 802..838 | 100 | <- | Minus |
| arm_2L | 836546..837342 | 1..801 | 99 | | Minus |
