MXO03154.5prime Sequence
846 bp (844 high quality bases) assembled on 2007-05-24
> MXO03154.5prime
CAGTCGACATGAGCTACGATGATGATGACTATCCGGCGGACACGTTCCCC
AAGGACTTTGGCTACCGGGCCTACAACCAGGATGGCCTGGAACTGGAGCC
CAATGCAACGGGCAGCAGCGAGACAAAGCCGCGCATTCTGCTGATGGGAA
TGCGCAGATCCGGCAAGAGCTCCATCCAAAAAGTGGTCTTCCACAAGATG
TCGCCGAACGAGACGCTCTTCCTGGAGTCGACCAGTAAGATCGTGAAGGA
CGACATCAACAACTCCAGCTTTGTGCAGTTCCAGATCTGGGACTTCCCCG
GCCAGATTGACTTCTTCGAGCCGACCTTTGATTCTGACATGATCTTTGGA
GGCTGTGGAGCCCTGGTCTTTGTCATCGATGCCAAGGATGACTACAACGA
GGCGCTGACCAAGTTCAAGAACACAGTGCTGCAGGCCTACAAAGTGAACA
AGCGCATCAAGTTCGAGGTGTTTATACACAAGGTGGATGGAATTAGCGAC
GACTCGAAAATGGAATCGCAGCGGGACATACACCAGCGGTCGTCGGATGA
CCTTAACGAGGCTGGCCTCGATCAGATCCACCTGAGTTTCCATCTGACCT
CCATATACGACCACTCCATCTTCGAGGCCTTCTCCAAGGTGGTGCAGAAG
CTGATTCCCCAGCTTCCGACGCTGGAGAATCTGCTGAACATTTTTATACC
AAACTCCGGAATAGAAAAAGCCTTTCTGTTCGATGTGGTTTCCAAAATTT
ACATAGCCACGGACTCGTCACCAGTCGATATGCAGACGTATGAGCTCTGC
TGCGATATGATTGACGTGGTCATTGATCTGTCCAGCATATACAGCT
MXO03154.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:33:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8707-PA | 1158 | CG8707-RA | 1..838 | 9..846 | 4190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RagC-D-RA | 1558 | CG8707-RA | 176..1014 | 8..846 | 4195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8162768..8163241 | 484..11 | 2370 | 100 | Minus |
| 2R | 25286936 | 2R | 8162488..8162708 | 701..481 | 1105 | 100 | Minus |
| 2R | 25286936 | 2R | 8162286..8162428 | 844..702 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:33:47 has no hits.
MXO03154.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:33:51 Download gff for
MXO03154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8707-PA | 1..838 | 9..846 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:19 Download gff for
MXO03154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RagC-D-RA | 169..1014 | 1..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:46 Download gff for
MXO03154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RagC-D-RA | 169..1014 | 1..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:46 Download gff for
MXO03154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8162283..8162428 | 702..846 | 98 | <- | Minus |
| 2R | 8162488..8162706 | 483..701 | 100 | <- | Minus |
| 2R | 8162770..8163243 | 8..482 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:19 Download gff for
MXO03154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4049788..4049933 | 702..846 | 98 | <- | Minus |
| arm_2R | 4049993..4050211 | 483..701 | 100 | <- | Minus |
| arm_2R | 4050275..4050748 | 8..482 | 99 | | Minus |
