MXO03155.5prime Sequence
905 bp (739 high quality bases) assembled on 2007-05-24
> MXO03155.5prime
CAGTCGACATGTCTAGTGCCAGGCTACTCGAGTCGCAGACATCCGACGAG
GATAACGAGGACATCGAGCGGCGGCCTCACCAGAGCCATTCACGCAGCTG
CAGCAACAACACCACCCCCACCCATCCACCACATCCCATGGTCAGGAAGG
GGGGTGTGGCCAGGAGGATCTGCCTGATAGGTGGGGCACTGTTCCTGCTC
CTCGTCGCCCTCTGCTACCTCACCCTCAGCGGGGACACTCGCCTCGGTGG
CTCCGAGGATTCGGAGGAGGGATCTCACCATGGATTAGATAGTATGAATT
TCCGGCCATTGAACGAAACCGTTCACATATGCAGCGAGAGTTACGAGGAT
CGACGGCAGTTCATGCAGGATAAGCCCCAATCTGATTACGTCCAGTTGCC
CGTGATATACTTTGTTACTCCAACGTATCCGCGGCGCGAGCAAATCCCAG
AACTAACCCGTCTGGCGCACACGCTGCTCCATATTCCACGATTGCACTGG
CTGGTGGCCGATGATCAAGAGAAATGCAATGACTATATGGACACGCTGCT
CTATCGATTTGGTATGCCCTTTACCCACATGGTCAGCCCGATGCCCAGCA
AATTCCGGAATGAAAAGCCAGCGCCGCGAGGTGTGGCAAATCGGAGGGCA
GCCTTGCAGTGGATACGGCAGCATAATCTCACCAACGGAATACTTTACTT
CGGAGACGACGACAACACCTATGATCTGCGTTTGTTCTCTGAAATCCGGN
AAACGCAACGGGTTTCCATGTTTCCTGTANGTCTTATTGCTGATTATGGG
GTCAGCGGGCCAGTTGTGCGCAAAGGCAAGGTTGTAGCATTCTTGGACTC
CTGGGTTGGCGGTCGACGCTGGCCCGTTGACTTGGCGGGTTTTGCAGTGA
ATTTG
MXO03155.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:33:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3881-PB | 1230 | GlcAT-S-RB | 1..897 | 9..905 | 4347 | 99.3 | Plus |
| CG3881-PA | 984 | GlcAT-S-RA | 33..651 | 287..905 | 2957 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GlcAT-S-RB | 2406 | CG3881-RB | 495..1391 | 9..905 | 4403 | 99.3 | Plus |
| GlcAT-S-RA | 1677 | CG3881-RA | 44..662 | 287..905 | 3013 | 99 | Plus |
| GlcAT-S-RC | 2116 | CG3881-RC | 1006..1622 | 289..905 | 3003 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9617330..9617609 | 9..288 | 1400 | 100 | Plus |
| 2L | 23513712 | 2L | 9621143..9621420 | 287..564 | 1390 | 100 | Plus |
| 2L | 23513712 | 2L | 9621478..9621742 | 561..825 | 1303 | 99.2 | Plus |
| 2L | 23513712 | 2L | 9621957..9622037 | 825..905 | 345 | 95.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:27:27 has no hits.
MXO03155.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:33:57 Download gff for
MXO03155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3881-PB | 1..897 | 9..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:04 Download gff for
MXO03155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GlcAT-S-RB | 489..1391 | 1..905 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:03 Download gff for
MXO03155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GlcAT-S-RB | 489..1391 | 1..905 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:03 Download gff for
MXO03155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9617324..9617609 | 1..288 | 98 | -> | Plus |
| 2L | 9621145..9621417 | 289..561 | 100 | -> | Plus |
| 2L | 9621479..9621741 | 562..824 | 99 | -> | Plus |
| 2L | 9621957..9622037 | 825..905 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:04 Download gff for
MXO03155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9617324..9617609 | 1..288 | 98 | -> | Plus |
| arm_2L | 9621145..9621417 | 289..561 | 100 | -> | Plus |
| arm_2L | 9621479..9621741 | 562..824 | 99 | -> | Plus |
| arm_2L | 9621957..9622037 | 825..905 | 95 | | Plus |
