MXO03156.5prime Sequence
897 bp (849 high quality bases) assembled on 2007-05-24
> MXO03156.5prime
CAGTCGACATGCGTTTGAATGAACCAGCTGCAAGAACGCGACCCAGAACT
AAATCAACGACAGACGCCACCAAGTTCTCATCATCCAGGGGTGACCTTCA
CCTCGATTGCGCCGTGCCCAACCTGATCAGGCTGCTCCTCCTCATCGCAA
CGATCATGGGCTCCGGACTCGTCCAGGCCAAGACAATTTACGACTCGGTT
AACATGATTCAGTCGCTGGATGCCTTGGTTGAGCCACGGGAAACGACCAA
GGTTCCGCTGCAAACAACGCCAGCCACGCCCCCCACTGCCCACGCCCACA
TCCACAACCAGGTGTCCACGTTACGGAGTAGTTACGAGGATTCAGATGAT
GGCGTAGATGGCGATTATGTCATCCCAGAGAGCCAGACATCTACGGTGGC
GATCCTGGATCAGGATTCCTCCATGAAGGGCCAGGACATGGAATCGTTAT
CCCTGCAGGCAGGATCGGGCACAGTTTCACCAAAGAGCAGCCCCGATTCG
TCCGGACACAAGAAGAACGCCTCCTTCCAGCAGATTGGCAGCCAGAATGT
TAACGCCTTAGTGCCGGCCACAGTGGCCACCACTTCATCCGGCCTCCCGT
CGAGCAGCAACGCCTCCTTGGCCACGCCCACGGAGCCGGCGAGGAACCGG
AGCACCGGACTCGTCCGCAACTCCGCTGTCAAGGTGGACAGCAAGCATCC
ACTGTCCAAGGGCCAGAAGACGGACGCACCCATGCTGAACTACATCTTCG
ACACGTTCTCTTCGGCCAATAAGCACCATCATCACGATCAGAGGTATGGC
CCCCACTTCGAGGATGTGCAGCGGATTGGTCAGGCCACCAATCTCACCGT
GCAGGCGGGCTCCAGCATTCACCTGAACTGCANGATCTCACTGCTGC
MXO03156.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:34:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12191-PA | 1578 | dpr20-RA | 1..889 | 9..897 | 4426 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr20-RA | 2717 | CG12191-RA | 579..1467 | 9..897 | 4434 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 854585..855044 | 795..336 | 2300 | 100 | Minus |
| 3L | 28110227 | 3L | 856343..856670 | 336..9 | 1640 | 100 | Minus |
| 3L | 28110227 | 3L | 854307..854412 | 897..792 | 519 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:33:54 has no hits.
MXO03156.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:34:02 Download gff for
MXO03156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12191-PA | 1..889 | 9..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:22 Download gff for
MXO03156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr20-RA | 579..1467 | 9..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:50 Download gff for
MXO03156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr20-RA | 579..1467 | 9..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:50 Download gff for
MXO03156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 854307..854410 | 794..897 | 99 | <- | Minus |
| 3L | 854587..855043 | 337..793 | 100 | <- | Minus |
| 3L | 856343..856670 | 9..336 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:22 Download gff for
MXO03156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 854307..854410 | 794..897 | 99 | <- | Minus |
| arm_3L | 854587..855043 | 337..793 | 100 | <- | Minus |
| arm_3L | 856343..856670 | 9..336 | 100 | | Minus |
