MXO03159.5prime Sequence
899 bp (838 high quality bases) assembled on 2007-05-24
> MXO03159.5prime
CAGTCGACATGAATAACCGTGGAGTTGGATTCTCGGAGTTTTTCGTAAAA
ACCCCAACCAGTCGGTCCATTCAATTGCGTGCCAAAAAAGTGGCAAAGGA
ACTGGTGATGCAAAATAAGGATGTGCGGGACAAGATATTGAAAAACAAAG
TGCTTACCTATGCACAATTCCGAAAGATAATGAAATCAGCTGGCAATGTG
ACGGATCTGAATCCGATCACCTATAAAAGTATGATTGAAATACGACAATC
GCAGATCGATCACAGACGTCTCAAGAGTATTAAATCTGCTGGGGATTCGC
TTGGATTTCATGCTCGCCTTCTCAATCGCAGCCAGTTAGCCGGCGAATTT
AACCAAAAGCAGGAGATTTTCCGAAAAAATATGGAACTCCTTGGACGGAT
TAACAAGACCAATCGACTAAAGGGGGGTGTGGATAGCTTCAATCGCCATT
TTCCCGCCCTTCAGTCGAATCGGAATAAAATCCGTGAGCTGGCAGATCGC
TTGAGCCAGGAGAACAGGCAGCTCGGTTGTCGCCTATCGCAAGTGAAATC
CAAAGTGGATTCACACAATCCTTGGGTGCCACCCGTCAAGCCACTCGAAC
AAAAGGCCTCCGATGAGACGGTCAGTACTTTCTTGCCATATATGCCATCG
CCTCGCTTGGGCAAACGTAGTGCCCAAATCCTGCTGCGACCCATCATATA
TTTCGATATGGCGGTGCGAGAGAATAACCAGTTCATGGGCAGATTACTCC
TACAACTCTACACGGAACTGAGTCCGGAAGTGGTGCTGGAGTTTGTGCGT
ATGGCCACCCACAACGATGTANGATGCCATCGGTTTGTGCGAATATTCTC
CATTCTCTGGATGGAGGCTGAACTTGTACCGGCTGTTCATGATTCCCTG
MXO03159.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:34:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32236-PA | 1158 | CG32236-RA | 1..891 | 9..899 | 4411 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32236-RA | 1463 | CG32236-RA | 150..1040 | 9..899 | 4429 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4666350..4667240 | 899..9 | 4429 | 99.8 | Minus |
Blast to na_te.dros performed 2014-11-28 20:05:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rooA | 7621 | rooA ROOA_LTR 7621bp | 3293..3329 | 481..517 | 113 | 78.4 | Plus |
MXO03159.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:34:12 Download gff for
MXO03159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32236-PA | 1..891 | 9..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:57 Download gff for
MXO03159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32236-RA | 146..1040 | 1..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:57 Download gff for
MXO03159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32236-RA | 146..1040 | 1..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:57 Download gff for
MXO03159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4666350..4667244 | 1..899 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:57 Download gff for
MXO03159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4666350..4667244 | 1..899 | 99 | | Minus |
