MXO03160.5prime Sequence
849 bp (631 high quality bases) assembled on 2007-05-24
> MXO03160.5prime
CAGTCGACATGGAAGCTGATGGACTGACCAACGAACAGACGGAGAAGGTC
CTCCAGTTCCAGGATCTCACCGGCATCGAGGATATGAACGTCTGCCGCGA
CGTCCTAATCAGACACCAATGGGATCTCGAGGTGGCCTTCCAGGAGCAGC
TAAATATCCGCGAGGGGCGTCCGACCATGTTCGCCGCCTCTACAGATGTC
CGAGCGCCCGCTGTCCTTAACGATCGCTTCCTGCAGCAGGTGTTTTCCGC
CAACATGCCTGGCGGAAGGACGGTTAGCCGGGTGCCCAGTGGCCCCGTTC
CCCGCAGCTTCACCGGCATCATTGGATATGTGATTAACTTCGTGTTTCAG
TACTTCTACTCCACGCTGACGAGCATCGTCAGTGCGTTTGTGAACCTGGG
CGGAGGAAACGAAGCCCGCTTGGTGACAGATCCACTGGGGGATGTGATGA
AGTTTATTAGGGAATACTACGAAAGGTATCCCGAGCACCCGGTCTTCTAT
CAGGGCACATATGCCCAGGCCCTTAACGATGCTAAGCAGGAGCTGCGTTT
TCTAATCGTTTACCTGCACAAGGATCCCGCCAAGAACCCAGATGTGGAAT
CCTTCTGCCGCAACACACTGTCGGCGAGATCGGTCATTGACTACATTAAC
ACACACACCCTGTTATGGGGATGCGACGTACCCACGCCGGAGGGCTACCG
GATGATGCAGTCGATAACGGTGCGCAGCTACCCAACGATGGTGATGATCC
GCCTTCGAGCACATCGCGTGATGATCGTCGGACGCTTCGAGGGGGATTGC
ACGCCCGACCAGCTGCACCGTCCCCTCTAGGCGGGGACGAACGCCTCCG
MXO03160.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:34:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10372-PA | 1395 | Faf-RA | 1..837 | 9..845 | 3860 | 98.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Faf-RB | 2279 | CG10372-RB | 362..1198 | 9..845 | 3990 | 98.4 | Plus |
| Faf-RA | 1978 | CG10372-RA | 451..1287 | 9..845 | 3990 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18707148..18707863 | 845..130 | 3385 | 98.2 | Minus |
| 2L | 23513712 | 2L | 18708114..18708238 | 133..9 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:26:30 has no hits.
MXO03160.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:34:21 Download gff for
MXO03160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10372-PA | 1..822 | 9..830 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:40 Download gff for
MXO03160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Faf-RA | 443..1272 | 1..830 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:37 Download gff for
MXO03160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Faf-RA | 443..1272 | 1..830 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:37 Download gff for
MXO03160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18707163..18707861 | 132..830 | 98 | <- | Minus |
| 2L | 18708116..18708246 | 1..131 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:40 Download gff for
MXO03160.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18707163..18707861 | 132..830 | 98 | <- | Minus |
| arm_2L | 18708116..18708246 | 1..131 | 96 | | Minus |
