MXO03162.5prime Sequence
881 bp (824 high quality bases) assembled on 2007-05-24
> MXO03162.5prime
CAGTCGACATGACGGCCGTAGAGCCAGCGACAAAGAAGAAGCGCATCTCG
AAGAAGAACAAATCGGCATGGCGCAAAACAGACATCCAGGATGTCGAGCA
GTTCCTCGAAGATCAGCGCCAGGAGGAGCGCGTTGGAACGTTCGCGGATA
AACAGGATGAGGATCTGTTCGTTGTGGACTCCAGCCTCCCGAAGACCAAG
GCCACCGTTCTGAGTGTGAAGCAAAAGCGGAAGCTGAATGCCAAGAAGCC
CATGCGCAGTTACCAGGCTTTGGAGAACACATCCAAAGTCCAAGATCCCA
TTGCCAAGCGCAACCATGTGCGCCAGAAGAAGAACGGACGTAACATCGAG
CTGGAGGTGTGCAATCCAACCAAGCCGCGCCATCGCCAGGCCAACAGCGA
TCGAGCTCAGTACTACGTAAAACTGGAACAGCGTCTGGCCGACAAGAAGA
ACAAGAAGCTTGATGTCGAGAAGGACATCTGGCAGGAGGTGGATTTTCGC
GACGAGATTCCTGGACTCAAGGACGAGAAGGGTTGGATCAGTCGCGAACT
GGCACTGCACACAGCTGGAAATATTGGCAAGAAGGTGGTGAAAACTCACG
CTAGTCTGCACCACAAAACCACCAAAGCCAAGAAATTCGAACTCCCGCAT
CCGGGCATGAGCTACAATCCCGCACCCGAGGATCATCAGGCGCTTATTGA
TCAGGTGGTGGAACGCGAGGAGGGCATCATTAAGAAGGAACAGCACCTTA
AGCGCGTGACCACCAGCATGTTCTCCAAGGTGACGCCCGAGGAGAGAGAT
CGTCGTCGCCTAAATGAAATGAGCCAAGGCATGGACGAGGAGGGAGGGTA
GTGAGCTCGATGAGGATGTTCAAACGAATGG
MXO03162.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:34:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1785-PA | 1437 | CG1785-RA | 1..835 | 9..843 | 4175 | 100 | Plus |
| CG1785-PA | 1437 | CG1785-RA | 834..872 | 843..881 | 170 | 97.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1785-RA | 1885 | CG1785-RA | 94..965 | 9..881 | 4325 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8715451..8715773 | 310..632 | 1615 | 100 | Plus |
| X | 23542271 | X | 8715835..8716083 | 632..881 | 1185 | 99.2 | Plus |
| X | 23542271 | X | 8715221..8715395 | 136..310 | 875 | 100 | Plus |
| X | 23542271 | X | 8715029..8715156 | 9..136 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:43:12 has no hits.
MXO03162.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:34:37 Download gff for
MXO03162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1785-PA | 1..872 | 9..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:21 Download gff for
MXO03162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1785-RA | 86..965 | 1..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:43 Download gff for
MXO03162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1785-RA | 86..965 | 1..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:43 Download gff for
MXO03162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8715222..8715395 | 137..310 | 100 | -> | Plus |
| X | 8715452..8715772 | 311..631 | 100 | -> | Plus |
| X | 8715021..8715156 | 1..136 | 97 | -> | Plus |
| X | 8715835..8716083 | 632..881 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:21 Download gff for
MXO03162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8609054..8609189 | 1..136 | 97 | -> | Plus |
| arm_X | 8609255..8609428 | 137..310 | 100 | -> | Plus |
| arm_X | 8609485..8609805 | 311..631 | 100 | -> | Plus |
| arm_X | 8609868..8610116 | 632..881 | 99 | | Plus |
