Clone MXO03163 Report

Search the DGRC for MXO03163

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:31
Well:63
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG33056-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO03163.5prime Sequence

162 bp (161 high quality bases) assembled on 2007-05-24

> MXO03163.5prime
CAGTCGACATGGCGAACGTGAAGATAGTGGAGTCCAAGCTGGACATATTC
CACGCACCGCAGACACATTCCTTGGCCCATGCCGTAGAGTCATCCTTTAC
GGCGGAACGGGGAACTCTCGCCTGGCAGTTTGCCCTGATCTACGGGGATG
TGGATGAACTAC

MXO03163.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG33056-PA 1032 CG33056-RA 1..154 9..162 770 100 Plus
CG33056-PB 1032 CG33056-RB 1..154 9..162 770 100 Plus
CG33056-PC 963 CG33056-RC 1..154 9..162 770 100 Plus
CG33056-PD 1032 CG33056-RD 1..154 9..162 770 100 Plus
CG33056-PE 1032 CG33056-RE 1..154 9..162 770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG33056-RE 1448 CG33056-RE 218..372 8..162 775 100 Plus
CG33056-RD 1558 CG33056-RD 328..482 8..162 775 100 Plus
CG33056-RC 1489 CG33056-RC 328..482 8..162 775 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21200141..21200295 162..8 775 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:18:30 has no hits.

MXO03163.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:34:43 Download gff for MXO03163.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33056-PE 1..154 9..162 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:19 Download gff for MXO03163.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33056-RC 319..482 1..162 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:29 Download gff for MXO03163.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33056-RC 319..482 1..162 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:29 Download gff for MXO03163.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21200141..21200302 1..162 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:19 Download gff for MXO03163.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21193241..21193402 1..162 98   Minus