MXO03166.5prime Sequence
891 bp (855 high quality bases) assembled on 2007-05-24
> MXO03166.5prime
CAGTCGACATGATGGCGCAAAGTGATTCTGGAAATTGCTGTGCCAAGCTT
AATAAAGATGAGTGCTGCCAGAAGACAAAGGATGTGATCTTGAGCGGCGT
ATCTCCCAAAATGTTTCCCGACAAAATCTACAAGTCTGTTCAACCCAAAG
GAGAGGATGCCACCGGAATGACCTGCGAATGCGGTGTTTTTGCAGCCATC
GCTTGCGGGGATTACCCAACACAACTGGACATAGCACAGATGATCTGCCT
CGGTCTGGTGGCTCTGCAGCATCGTGGCCAGGAGTCGGCGGGAATAGTGA
CCAGTTTGGGCAAGTCCTCCAAGAATTTCAGCGTACACAAGGGCATGGGC
ATGATCAACAATCTGTTCAATGACGAGGCGATCAGGAAGTTAAAGGGTAA
CCTGGGAATAGGACACACCCGGTATTCCACGGCCGCAGCCTCGGAAGTTG
TGAACTGCCAGCCGTTTGTGGTGCACACTGCCCATGGAGCACTGGCCATT
GCCCACAATGGTGAGCTAGTGAACTGCGAGTCCCTGAGGAGGGAGGTCCT
GGAGCGAGGAGTGGGCCTGTCTACGCACAGTGACAGTGAACTTATTGCCC
AATCCCTGTGCTGTGCACCAGAGGATGTGTCGGAGCACGATGGACCCAAT
TGGCCGGCCAGAATTCGCCATTTCATGACCCTGGCTCCACTCTCCTACTC
CCTGGTCGTGATGCACAAGGATAAGATCTACGCTGTCCGCGATTCCTATG
GCAATAGACCGCTGTGCTTGGGAAAAATCGTGCCCGTTGATGCAGGACAT
GCGAATATCAATGACCAACTGGCCGAGGGGTTGGGTGGTCAGTAGTGAAA
GCTGCGGAATCCTCTCCCATCGAGCCAGATATGGTCGCGAG
MXO03166.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:34:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10078-PB | 1644 | Prat2-RB | 1..821 | 9..829 | 4105 | 100 | Plus |
| CG10078-PA | 1413 | Prat2-RA | 1..590 | 240..829 | 2950 | 100 | Plus |
| CG10078-PB | 1644 | Prat2-RB | 819..858 | 828..867 | 175 | 97.5 | Plus |
| CG10078-PA | 1413 | Prat2-RA | 588..627 | 828..867 | 175 | 97.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prat2-RB | 1932 | CG10078-RB | 188..1069 | 9..891 | 4315 | 99.4 | Plus |
| Prat2-RA | 1737 | CG10078-RA | 209..874 | 225..891 | 3235 | 99.3 | Plus |
| Prat-RB | 2105 | CG2867-RB | 249..858 | 176..785 | 935 | 76.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6912862..6913527 | 891..225 | 3195 | 99 | Minus |
| 3R | 32079331 | 3R | 7910845..7911454 | 785..176 | 935 | 76.9 | Minus |
| 3L | 28110227 | 3L | 6914414..6914582 | 224..56 | 845 | 100 | Minus |
| 3L | 28110227 | 3L | 6914641..6914689 | 57..9 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:49:10 has no hits.
MXO03166.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:34:55 Download gff for
MXO03166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10078-PB | 1..882 | 9..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:48 Download gff for
MXO03166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat2-RB | 181..1069 | 1..891 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:41:13 Download gff for
MXO03166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat2-RB | 181..1069 | 1..891 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:41:13 Download gff for
MXO03166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6912862..6913527 | 225..891 | 99 | <- | Minus |
| 3L | 6914414..6914580 | 58..224 | 100 | <- | Minus |
| 3L | 6914641..6914694 | 1..57 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:48 Download gff for
MXO03166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6907741..6907794 | 1..57 | 92 | | Minus |
| arm_3L | 6905962..6906627 | 225..891 | 99 | <- | Minus |
| arm_3L | 6907514..6907680 | 58..224 | 100 | <- | Minus |
