MXO03172.5prime Sequence
954 bp (866 high quality bases) assembled on 2007-05-24
> MXO03172.5prime
CAGTCGACATGGTATTAATTGCTGCGGCTGTCTGCACGAAGAATGGCAAA
GTGATTCTGTCACGTCAGTTCGTCGAGATGACGAAGGCACGCATCGAGGG
ACTGCTGGCTGCCTTTCCCAAGCTGATGACTGCTGGCAAGCAGCACACTT
ACGTGGAGACGGACTCCGTGCGCTACGTCTACCAGCCGATGGAGAAACTA
TATATGCTGCTCATCACCACTAAGGCCAGCAACATTCTGGAGGATCTGGA
GACCCTGCGCCTCTTCTCGAAAGTGATTCCCGAGTACAGCCACTCGCTCG
ACGAGAAGGAGATTGTGGAGAATGCCTTCAATCTGATCTTCGCATTTGAC
GAGATCGTGGCACTCGGCTACAGGGAGAGCGTCAACTTGGCCCAGATCAA
GACCTTCGTGGAGATGGACTCACATGAGGAGAAGGTCTACCAGGCAGTGC
GTCAGACGCAGGAGCGTGATGCGCGCCAGAAGATGCGCGAGAAGGCCAAG
GAACTGCAGCGGCAGCGCATGGAGGCCAGCAAACGGGGTGGTCCCTCCCT
GGGTGGCATTGGCAGCCGCAGCGGCGGCTTTAGCGCCGACGGAATTGGCA
GTAGCGGCGTGAGCAGCAGTTCCGGTGCCTCCAGCGCCAACACCGGCATC
ACCTCCATCGATGTGGACACCAAATCCAAGGCGGCTGCCAGTAAACCAGC
TTCCCGCAATGCCCTCAAGCTAGGTGGCAAGTCCAAGGACGTCGATAGTT
TCGTGGATCAGCTGAAGAACGAGGGCGAGAAGATTGCCAATCTGGCACCG
GCGGCGCCCGCTGGAGGTTCCAGTGCTGCAGCTAGCGCCAGTGCAGCGGC
CAAGGCAGCTATCGCGTCGGACATTCACAAAGAGAGCGTACATCTGAAGA
TTGAGGACAAGCTAGTAGTGCGTCTGGGACGCGATGGTGGCGTGCAGCAG
TTCG
MXO03172.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:35:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14813-PA | 1599 | deltaCOP-RA | 1..946 | 9..954 | 4730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| deltaCOP-RA | 2170 | CG14813-RA | 194..1139 | 9..954 | 4730 | 100 | Plus |
| deltaCOP-RB | 2167 | CG14813-RB | 194..1136 | 9..954 | 4675 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1860686..1861099 | 688..275 | 2070 | 100 | Minus |
| X | 23542271 | X | 1861156..1861381 | 275..50 | 1130 | 100 | Minus |
| X | 23542271 | X | 1860427..1860624 | 886..689 | 990 | 100 | Minus |
| X | 23542271 | X | 1860303..1860372 | 954..885 | 350 | 100 | Minus |
| X | 23542271 | X | 1861446..1861486 | 51..11 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:18:32 has no hits.
MXO03172.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:35:14 Download gff for
MXO03172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14813-PA | 1..946 | 9..954 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:21 Download gff for
MXO03172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| deltaCOP-RA | 189..1141 | 1..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:31 Download gff for
MXO03172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| deltaCOP-RA | 187..1139 | 1..954 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:31 Download gff for
MXO03172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1860303..1860370 | 887..954 | 100 | <- | Minus |
| X | 1860427..1860624 | 689..886 | 100 | <- | Minus |
| X | 1860686..1861098 | 276..688 | 100 | <- | Minus |
| X | 1861156..1861379 | 52..275 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:21 Download gff for
MXO03172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1754336..1754403 | 887..954 | 100 | <- | Minus |
| arm_X | 1754460..1754657 | 689..886 | 100 | <- | Minus |
| arm_X | 1754719..1755131 | 276..688 | 100 | <- | Minus |
| arm_X | 1755189..1755412 | 52..275 | 100 | <- | Minus |
