MXO03175.5prime Sequence
843 bp (703 high quality bases) assembled on 2007-05-24
> MXO03175.5prime
CAGTCGACATGACGAGTGCAAGTCTATTGTCGCGTTCCCTGCTAACAGAA
GCTCCGCGTTCTAAGAATCGCTCGGTGTTTACCTTGATTGCTGGTTTGGT
GGTCGGCTACTGCCTGGCTCAAATCTTCTCCAGCATTGCGCCGCACGAGA
GTCTCTATCCGTATCTCAGCAGACGGTTCAGCGATTCCCAGGTGGCCACC
GGTGGTCAATTGGCTCCGGAGCAGAGCGGGTTGAAGCATGATCATCGCAA
CGACAACGTCAGCGTGGCCGAGCAGTTGAAGAAGGAGGTACGCATCCTCT
GCTGGGTGATGACCAATCCCACAAACCACAAGAAGAAGGCTCGCCATGTG
AAGCGAACCTGGGGCAAGCGCTGCAACATCTTGCTCTTCATGAGTTCCGG
CGCGGATGAGGAGCTGCCCACCGTGAAGCTCGACGTGGGCGAGGGACGGG
AGAATCTATGGGCCAAGGTCAAGGAGGCGTTCAAGTACGTCTATCATCAC
CACTATAACGACGCCGACTTCTTCTACAAGGCCGATGACGACACTTACGC
CGTGATCGAGAACATGCGGTATATGCTCTATCCGTACAATCCCGAAACAC
CCGTGCACTTCGGATTCAAGTTCAAGCCCTTCGTGAAGCAGGGCTACATG
TCCGGCGGAGCGGGCTACATACTCAGTCGGGAGGCCCTGCGTCGCTTCGT
GGTCGAGGGCATTCCGAATCCCAAGATGTGCCTGCCGGGCACGGTGGTCA
ACGAGGACATCGAAATCGGGCGATGCATGGAGAACCTGAACGTCACCGCC
GGCGATTCCAGGGACGAAATCGGTCGCGGTCGCATGTTTCCCT
MXO03175.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:35:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8708-PA | 933 | CG8708-RA | 1..835 | 9..843 | 4175 | 100 | Plus |
| CG8708-PB | 1353 | CG8708-RB | 1..835 | 9..843 | 4175 | 100 | Plus |
| CG9520-PB | 1167 | CG9520-RB | 624..713 | 617..706 | 150 | 86.6 | Plus |
| CG9520-PC | 1167 | CG9520-RC | 624..713 | 617..706 | 150 | 86.6 | Plus |
| CG9520-PA | 1167 | CG9520-RA | 624..713 | 617..706 | 150 | 86.6 | Plus |
| CG9520-PB | 1167 | CG9520-RB | 338..385 | 331..378 | 140 | 91.6 | Plus |
| CG9520-PC | 1167 | CG9520-RC | 338..385 | 331..378 | 140 | 91.6 | Plus |
| CG9520-PA | 1167 | CG9520-RA | 338..385 | 331..378 | 140 | 91.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8708-RD | 1862 | CG8708-RD | 349..1183 | 9..843 | 4175 | 100 | Plus |
| CG8708-RB | 1674 | CG8708-RB | 161..995 | 9..843 | 4175 | 100 | Plus |
| CG8708-RC | 1626 | CG8708-RC | 155..947 | 51..843 | 3965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8160138..8160931 | 843..50 | 3970 | 100 | Minus |
| 2L | 23513712 | 2L | 8944428..8944862 | 731..297 | 705 | 77.5 | Minus |
| 2R | 25286936 | 2R | 8161033..8161075 | 51..9 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:34:08 has no hits.
MXO03175.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:35:24 Download gff for
MXO03175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-PB | 1..835 | 9..843 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:32 Download gff for
MXO03175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-RB | 152..995 | 1..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:57 Download gff for
MXO03175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-RB | 152..995 | 1..843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:57 Download gff for
MXO03175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8161033..8161079 | 1..51 | 92 | | Minus |
| 2R | 8160138..8160929 | 52..843 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:32 Download gff for
MXO03175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4047643..4048434 | 52..843 | 100 | <- | Minus |
| arm_2R | 4048538..4048584 | 1..51 | 92 | | Minus |
