MXO03178.5prime Sequence
793 bp (725 high quality bases) assembled on 2007-05-24
> MXO03178.5prime
CAGTCGACATGCTCTCCTACGAGCCCTCATGCTCGATGGCGGTCCTGAAG
CACCACCCTCATCAGCACCAGCACCACGTGCCTCTGCCGCAGCGGTCAAA
CGAAAGCGCCTCGCACCACGCCCATGAATATGTGCCTGACTCCCAGCCCA
CCTCTCCGGCCCTACGTATGAGTTCTGAGGCGGTGGACTCGCCACTGGAC
CAGCAGGGCAACAACTCGGTGCCGGAACGCACGGATAGTTCCCACAAACT
GCGCCTGGGGCAGGCTTACTCGGAACGGACGCCGGAATCGATGACCCAGG
CCATTGACCCCATGGATATTATACCCAAGTCGGAGTCCGAATCGGAGGTG
GAACGTCTGCAGCGGGCCTCCAGATTCCTAGCGCGCCAGGAACAGCACCA
AGCCCAGCAGCAACAGCACCAGCAGCAGTTGCTGCCCGGTCAGCAGATCT
TCCCCAGCTACACGCATCCTTTGCCGTCGATGAATGCACCAAATACCTCC
CAACAGTCGCCTTACACACCGGGTCTGATGAGTCGCTTTAGAAAACGCGG
CGAACGCATGTCCAAGGACCAAAAGGAGCTGTACGTTAAGTTTTTCGAGG
ACAATCCATGCATGCTATCAAACCACCGCCGGCACGATGGCCTCACTGAA
CCATTGTGGGCAAAATTGGCCCACATGCTGAATAGTGTTCCCCAAGGCGC
CGTAAAGAACGTAGAGGACTGGAAGCAGACCTTTGACGCCTGGCGGTACC
GCATCTTCATGTACACACGCTACAACTCCAAGCTCAGCATGTC
MXO03178.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:35:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12022-PA | 951 | CG12022-RA | 1..785 | 9..793 | 3925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42676-RE | 1577 | CG42676-RE | 549..1333 | 9..793 | 3925 | 100 | Plus |
CG42676-RC | 1411 | CG42676-RC | 383..1167 | 9..793 | 3925 | 100 | Plus |
CG42676-RF | 1668 | CG42676-RF | 1104..1221 | 667..784 | 185 | 78.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1803821..1804355 | 9..543 | 2675 | 100 | Plus |
3L | 28110227 | 3L | 1804417..1804666 | 544..793 | 1250 | 100 | Plus |
3L | 28110227 | 3L | 1806356..1806473 | 667..784 | 185 | 77.1 | Plus |
Blast to na_te.dros performed 2014-11-28 19:56:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2781..2849 | 378..446 | 174 | 72.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6811..6856 | 383..428 | 158 | 82.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6819 | 383..445 | 153 | 71.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6785 | 383..432 | 151 | 78 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2383 | 385..462 | 149 | 67.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6778..6823 | 383..428 | 149 | 80.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1506..1565 | 366..428 | 137 | 71.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1110..1149 | 388..427 | 137 | 82.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6790..6865 | 383..457 | 134 | 65.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1541..1586 | 383..428 | 131 | 76.1 | Plus |
invader4 | 3105 | invader4 INVADER4 3105bp | 81..135 | 104..50 | 131 | 70.9 | Minus |
invader4 | 3105 | invader4 INVADER4 3105bp | 2840..2894 | 104..50 | 131 | 70.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2336..2380 | 383..427 | 126 | 75.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2351..2431 | 383..462 | 123 | 63 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6795 | 391..462 | 120 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2446..2518 | 391..462 | 119 | 64.4 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7943..8022 | 393..468 | 119 | 66.2 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 9387..9466 | 393..468 | 119 | 66.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1072..1134 | 383..445 | 117 | 65.1 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 95..196 | 351..446 | 117 | 63.1 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9125..9226 | 351..446 | 117 | 63.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2765..2825 | 386..446 | 116 | 65.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2390..2470 | 383..462 | 114 | 61.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1117..1164 | 383..430 | 114 | 70.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2616..2659 | 384..427 | 112 | 72.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6763 | 404..446 | 107 | 72.1 | Plus |
MXO03178.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:35:47 Download gff for
MXO03178.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12022-PA | 1..785 | 9..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:50 Download gff for
MXO03178.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42676-RC | 376..1167 | 1..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:56 Download gff for
MXO03178.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42676-RC | 376..1167 | 1..793 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:56 Download gff for
MXO03178.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1803814..1804355 | 1..543 | 99 | -> | Plus |
3L | 1804417..1804666 | 544..793 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:50 Download gff for
MXO03178.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1803814..1804355 | 1..543 | 99 | -> | Plus |
arm_3L | 1804417..1804666 | 544..793 | 100 | | Plus |