MXO03180.5prime Sequence
932 bp (788 high quality bases) assembled on 2007-05-24
> MXO03180.5prime
CAGTCGACATGGAAATCGGCAACGATCAGTCCTATCAGGACTTCTTCGAC
AAGTTGCGAAGTGAATCGGGTCCTCGCAACTTGCGCCAGATCTTTGAGGA
CGACGATCGTCCGCTGGCGAACGAATCATCCAGCTTGCGCTATCAGCCAG
GCAGCTCCAAAAAATTGCAGGCTGGCAAAAGACCGGCCATGACCAGGAGT
AGCACCCAGGAGACGGGTGATTCACCGCCTGCCGCCTGGAACACGGCCAT
TGCCAAGGTGGTGCATGCCTATCGGAGCAGCGAGAACGTTGGACGCGTCG
GCCTGGCCCTCTCGATTCTGGGCGAGATGGAGGCCAGCAAGCTGATTGTC
TACCGCAGCAAGAGTCAGGTGCTGACCACGCTGCAGTTGACACCGCGTGG
CGGCAAGGTGATACTGCGCGAATCCTATCTGCAGTTCTACGATGACGAGC
AGCGCTTCTGGAGCCTGCGATTCGACAAGGAACCGGATGAGAAGGAATTC
ATAACGTTTATGGTCAAAAACAAACTGCCAGTGGAGCACTATCTCAGCGA
GATCTCATCCTCCAGCTCGGCATCGCCTTCGCGTGAGGATTTATCTAAGA
TCCGAACTAAAGCAACGGTCACAAAGACGACGCCTAATCCGCCACAGCCG
CAACCACGTTCCCGCGTAACGCTGCCAACGCTGGAGAAGGCGGACGATGA
GGAACGCGAACGGGAAACAGAGACACCTTCCAATGAGGATGTGATAGTAA
CGCCAGTGCCGCGACCCATAGGTTCGTCAAATGCTCACAGGAAACTCAGT
GCCAGTTCCCTGGCGGTGGCCAACGCTTCAACGAGCAGCGATACTCCGTT
GGCTGTGACGACACTGGACAAATATCTAGACGAACAGCGTGCCTCGGGGT
GCGTTAATGGAGCACAGGATGGACGCCATTCT
MXO03180.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:35:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3342-PA | 1362 | CG3342-RA | 1..890 | 9..898 | 4450 | 100 | Plus |
| CG3342-PA | 1362 | CG3342-RA | 888..923 | 897..932 | 155 | 97.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3342-RA | 1709 | CG3342-RA | 85..1008 | 8..932 | 4585 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6526807..6527678 | 932..60 | 4300 | 99.8 | Minus |
| X | 23542271 | X | 6527751..6527804 | 61..8 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:39:21 has no hits.
MXO03180.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:35:56 Download gff for
MXO03180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3342-PA | 1..923 | 9..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:30 Download gff for
MXO03180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3342-RA | 78..1008 | 1..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:28 Download gff for
MXO03180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3342-RA | 78..1008 | 1..932 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:28 Download gff for
MXO03180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6526807..6527676 | 62..932 | 99 | <- | Minus |
| X | 6527751..6527807 | 1..61 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:30 Download gff for
MXO03180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6420840..6421709 | 62..932 | 99 | <- | Minus |
| arm_X | 6421784..6421840 | 1..61 | 93 | | Minus |
