MXO03181.5prime Sequence
841 bp (809 high quality bases) assembled on 2007-05-24
> MXO03181.5prime
CAGTCGACATGGCCAGCTCCAATGTCTCGGATTGGGATGAGCCGATGCCC
ACGTCGACGGAGTCGCTGCCCGAGGAGGAGGATCCGGATGTGTGCGCAGA
GGAGAACGTAAAGAAGCGGCGGGAGGAGGAACTGGACAAGCTGGAGTTGT
ATGTGCGGCGCATGGCCTACCAGCCGACACTGCCGCCCAAGGTAAAGCCC
TACGACGTGGCCCTGTCCAAGCCCAAGTTGCACACGCTCATCGACAACTA
CGAGCAGTTCAAGGATGTATACGATCCGAAGCTGCGGGCCAAGCGGATCA
AGCGCATGCTGGGCAAATACAAAGCCATTACCACGGAACAGCTGGAGCAG
ATCCTTAAGAGCAACAAGACCAAGGAGCGAAAGAAGGAGGATTTCCTGAA
GCGCAAGCAGGAACTGTACTACAACATGCTGACCAAGCTGGAGCGCCAGT
GCCGCACCCAGTACCTGAACGTGCTCATCAAGAAGTTCGCCAAATTCATT
TCCCATCTGGCCACAACGATGCGCATTCCGCCGCAGCTGGTGGATCCGTA
TGCGCGCATGCAGCGCGGCATCTTCTGCAACATCCTGTTGGCCATTGGTG
TGCAGCCCACCTCACAGTCGGCCATCTACTACACCAGCCAGGATGCCATC
GAGTACGATGTGTGCCATCGCCTCGCGCACGCGCTGCTCAGTTTGATCAT
TAAGGCGCTGGACTCGGCAGCCACAAGGGATCCCAACGAGCTGGCCAAGC
CGGCCGACTTGGACTTCGAGATGGACAATCACATCAAGCGTCGGCTCATG
TGCGCCGCCGAGAAGAAGCTGCTGTACGAGCGCCGTCGCAA
MXO03181.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:36:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15892-PA | 894 | CG15892-RA | 1..833 | 9..841 | 4165 | 100 | Plus |
| CG15892-PB | 894 | CG15892-RB | 1..833 | 9..841 | 4165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:43:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15892-RA | 1173 | CG15892-RA | 205..1038 | 8..841 | 4170 | 100 | Plus |
| CG15896-RB | 2809 | CG15896-RB | 1873..2376 | 841..338 | 2520 | 100 | Minus |
| CG15896-RB | 2809 | CG15896-RB | 2442..2771 | 337..8 | 1650 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:43:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6293241..6293744 | 841..338 | 2520 | 100 | Minus |
| X | 23542271 | X | 6293810..6294139 | 337..8 | 1650 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:43:27 has no hits.
MXO03181.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:36:02 Download gff for
MXO03181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15892-PB | 1..831 | 9..839 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:59 Download gff for
MXO03181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15892-RA | 201..1036 | 1..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:10 Download gff for
MXO03181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15892-RA | 201..1036 | 1..839 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:10 Download gff for
MXO03181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6293243..6293744 | 338..839 | 100 | <- | Minus |
| X | 6293810..6294143 | 1..337 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:59 Download gff for
MXO03181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6187276..6187777 | 338..839 | 100 | <- | Minus |
| arm_X | 6187843..6188176 | 1..337 | 99 | | Minus |
