MXO03183.5prime Sequence
871 bp (817 high quality bases) assembled on 2007-05-24
> MXO03183.5prime
CAGTCGACATGTCGGGAGTCGCCATAGCCATCAATGCGGCCATTTCGGGC
GCCGCCTACTGCATGACAGTCCGGATGATACCCCGCTTCCGCGAGATGTT
CATCAAGGCCAATCTCTTTGGCAACGATCTGTGCAAGAAGGACAAGCCGC
AGGTACCTGAATCCTTTGGTGTGCTTATTGGCTGTGTGTTCCTGGTGTCC
TTGTTTCTGTTCATACCGATTCCCTTCGCCTTCGACGAGGCAGCTGCCAC
GGATGCGATTACTGGAGGCAAACCAGATACCTTTCCACATGATAAGTTCG
TGGAATTGATTGCCGCCCTTCTTTCCATTTGCTGCATGATCTTCTTGGGC
TTCGCCGATGACGTTCTCGACCTGCGATGGCGCCACAAGCTCCTGTTGCC
CACCATCGCCACGTTGCCGCTGCTAATGGTGTACTACGTAAACTATAACT
CCACGACGGTCATTATGCCCAACTTTGCAAGGAATCTGATTGGGACCTCC
TTGAATATAGGTGCCTTGTACTACGTCTTCATGGGCATGTTGGCGGTATT
CTGCACAAATGCCATCAACATCCTGGCGGGCATCAATGGCCTGGAGGTGG
GACAATCCTTTATTATTGCAGGCTCCATTCTGGTCTTCAATGCCATTGAA
CTGTTGCTCGGTCACCAGGTGGATTCGCATATATTCTCCATTTACTTCAT
GCTGCCTTTCCTGGCCACCACCCTAGCGCTATGGAAGTTCAACAAATATC
CATCGCAGGTGTTTGTTGGGGACACCTACTGCTACTTTGCCGGCATGACT
TTCGCCGTGGTTGGAATCCTGGGCCACTTCAGCAAGACGCTGCTGCTCTT
CTTCCTGCCGCAGATCCTGAA
MXO03183.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:36:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5287-PA | 1230 | CG5287-RA | 1..863 | 9..871 | 4315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5287-RA | 1557 | CG5287-RA | 231..1094 | 8..871 | 4320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13180159..13180395 | 509..745 | 1185 | 100 | Plus |
| 2L | 23513712 | 2L | 13179885..13180102 | 295..512 | 1090 | 100 | Plus |
| 2L | 23513712 | 2L | 13179477..13179623 | 8..154 | 735 | 100 | Plus |
| 2L | 23513712 | 2L | 13179683..13179824 | 155..296 | 710 | 100 | Plus |
| 2L | 23513712 | 2L | 13182907..13183032 | 746..871 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:36:11 has no hits.
MXO03183.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:36:22 Download gff for
MXO03183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5287-PA | 1..861 | 9..869 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:42 Download gff for
MXO03183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5287-RA | 221..1094 | 1..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:16 Download gff for
MXO03183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5287-RA | 221..1094 | 1..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:16 Download gff for
MXO03183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13179467..13179623 | 1..154 | 97 | -> | Plus |
| 2L | 13179683..13179824 | 155..296 | 100 | -> | Plus |
| 2L | 13179887..13180100 | 297..510 | 100 | -> | Plus |
| 2L | 13180161..13180395 | 511..745 | 100 | -> | Plus |
| 2L | 13182907..13183032 | 746..871 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:42 Download gff for
MXO03183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13179683..13179824 | 155..296 | 100 | -> | Plus |
| arm_2L | 13179467..13179623 | 1..154 | 97 | -> | Plus |
| arm_2L | 13179887..13180100 | 297..510 | 100 | -> | Plus |
| arm_2L | 13180161..13180395 | 511..745 | 100 | -> | Plus |
| arm_2L | 13182907..13183032 | 746..871 | 100 | | Plus |
