MXO03186.5prime Sequence
826 bp (824 high quality bases) assembled on 2007-05-24
> MXO03186.5prime
CAGTCGACATGTCATTCCTGCGAAAATCGGTGCACCTATTGGGTTCTGTG
GCGAGGCGCCAACGACACCTGAAAGTGATTGAAGGAGCGATCTCGACAGC
TGCGCGGGACTTCAGCTCAAAGCCATCGGAAGATTACGCCAATTTCCCCG
GTGCCAAGGCTCCATTTGTCAGCAAATTGAACCTCATTCAACCGGAAGAC
TATGCGCCAATACCAATTTACCGGGTGATGGACCAGGATGGCTATATAGC
GGATGAGACCCAGGATCCCCAGCTGGGCCGTGAGGTTGTGGAGAAAATGT
TTCGCGATATGGTGCTGCTGAACACCATGGACAAAATCCTGTACGAATCC
CAGCGACAGGGCAGAATCTCATTCTACATGACCAATTTCGGCGAGGAGGC
TTCACACATTGGCAGTGCCGCCGCCTTGGAGATGCGGGATCTCATCTACG
GGCAGTATCGTGAAGCGGGTGTTCTGGTTTGGCGTGGCTTCCGTATCGAC
CAGTTTATCGATCAGTGCTACGGCAACACGGACGACTTGGGTCGCGGCAA
GCAGATGCCCGTCCACTACGGCTCAAGGGAACTTAACTTTGTCACCATCT
CCAGTCCGCTTTCCACCCAAATGCCCCAGGCCGTTGGTGCCGCCTACGCC
ATGAAATTGAGGCCAAACAACGATGCCTGTGTGGTCTGTTACTTTGGTGA
GGGAGCTGCTTCCGAGGGAGATGCACATGCTGCCTTTAACTTTGCTGCCA
CTTTGGGTTGTCCGGCTATCCTCTTCTGTCGAAACAACGGCTTTGCCATA
TCCACACCATCGCATGAACAGTACAA
MXO03186.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:36:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8199-PA | 1320 | CG8199-RA | 1..818 | 9..826 | 4090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8199-RA | 1750 | CG8199-RA | 90..908 | 8..826 | 4095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9556003..9556538 | 77..612 | 2680 | 100 | Plus |
| 3R | 32079331 | 3R | 9556605..9556770 | 613..778 | 830 | 100 | Plus |
| 3R | 32079331 | 3R | 9555874..9555943 | 8..77 | 350 | 100 | Plus |
| 3R | 32079331 | 3R | 9556886..9556934 | 778..826 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:48:44 has no hits.
MXO03186.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:36:29 Download gff for
MXO03186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8199-PA | 1..816 | 9..824 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:06 Download gff for
MXO03186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8199-RA | 90..906 | 8..824 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:43 Download gff for
MXO03186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8199-RA | 90..906 | 8..824 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:43 Download gff for
MXO03186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9555874..9555943 | 8..77 | 100 | -> | Plus |
| 3R | 9556004..9556538 | 78..612 | 100 | -> | Plus |
| 3R | 9556605..9556770 | 613..778 | 100 | -> | Plus |
| 3R | 9556887..9556932 | 779..824 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:06 Download gff for
MXO03186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5382327..5382492 | 613..778 | 100 | -> | Plus |
| arm_3R | 5382609..5382654 | 779..824 | 100 | | Plus |
| arm_3R | 5381596..5381665 | 8..77 | 100 | -> | Plus |
| arm_3R | 5381726..5382260 | 78..612 | 100 | -> | Plus |
