MXO03187.5prime Sequence
825 bp (706 high quality bases) assembled on 2007-05-24
> MXO03187.5prime
CAGTCGACATGAGATCGAGGCTGTTTTGGATACTGGCGATTATATACTCC
TCACTCCATCACATCGGCTCGGGTTCCACGTCGACCACATTGAAACGACC
GCGAGCTGGCGATCCATTCGACACGTTTCCGAAGAACTTCTGGCAGGAGT
TCTCATCGCCGTTCACCGACACGCCCGAGGATGAGGAGCTGGAGGTCACC
GAGACGACCACCCACGAGCCGTTCCCGTTCTTCGCCGATCCGTACACCAC
GCTGAACATCAGCACCCAGCTCTCGTCCAGCGTTTATCTGCACTGCCGGG
TGAACGATCTGCAGGGCAAGACGGTGTCCTGGATGCGTCGCCGTGGCGAT
GATCTCACCCTGATAACCTTTGGCCAGCACACATATAGCGGCGACTCGCG
GTATTCGCTGGAGTTCGAGGAGCCCAACGATTGGAAGCTGCTCATCCAGT
TCGCCAACGAGCGGGACGAGGGTCCCTACGAGTGCCAGGTGTCCTCGCAT
CCGCCGCTCGTCCTGCTCGTTTACCTTACTATAATTGTTCCTCACGTGGA
GATACTCGACGAGCGGGGCTCGGCCACGCCGGAGAAGTACTACAAGGCTG
GCAGCACCATCGAGCTGCAGTGCGTCATTTCGAAGATTCCGCATCCCTCC
TCCTATATCACCTGGCGGCACGGACCGCGCCTGCTCAACTACGATACTAG
TCGCGGAGGAATCAGTGTCAAGACGGACATGCTGCCAGGACGAGCTCTGA
GTCGCCTGTATATCGCCAATGCCAATCGCCAGGACACGGGCAACTACACC
TGCATGCTGGGCAATGAGATTACGG
MXO03187.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:36:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10946-PA | 1023 | dpr14-RA | 1..817 | 9..825 | 4085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr14-RB | 3794 | CG10946-RB | 660..1476 | 9..825 | 4085 | 100 | Plus |
| dpr14-RA | 1668 | CG10946-RA | 477..1293 | 9..825 | 4085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7906500..7906946 | 537..91 | 2235 | 100 | Minus |
| X | 23542271 | X | 7906249..7906427 | 715..537 | 895 | 100 | Minus |
| X | 23542271 | X | 7906072..7906184 | 825..713 | 565 | 100 | Minus |
| X | 23542271 | X | 7907257..7907338 | 90..9 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:27:53 has no hits.
MXO03187.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:36:35 Download gff for
MXO03187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10946-PA | 1..817 | 9..825 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:11 Download gff for
MXO03187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr14-RA | 472..1293 | 1..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:14 Download gff for
MXO03187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr14-RA | 472..1293 | 1..825 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:14 Download gff for
MXO03187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7906072..7906181 | 716..825 | 100 | <- | Minus |
| X | 7906249..7906426 | 538..715 | 100 | <- | Minus |
| X | 7906500..7906946 | 91..537 | 100 | <- | Minus |
| X | 7907257..7907343 | 1..90 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:11 Download gff for
MXO03187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7800105..7800214 | 716..825 | 100 | <- | Minus |
| arm_X | 7800282..7800459 | 538..715 | 100 | <- | Minus |
| arm_X | 7800533..7800979 | 91..537 | 100 | <- | Minus |
| arm_X | 7801290..7801376 | 1..90 | 96 | | Minus |
