MXO03189.5prime Sequence
726 bp (690 high quality bases) assembled on 2007-05-24
> MXO03189.5prime
CAGTCGACATGTCGAAGGAAGACTCAGGCGCATCCAGTGCAGAGGCGAAT
CCAGCTGAATCGGAAATTTCGATGGGTCGAGGACCCCGCCCAAGGTCCTT
TACTGGCGGCGGAGGCGGTGGCGGAACAGGTGGATCAGGTGGAAGTGGTG
GTACCTCCGGCGGCAACAATCTCAAGCCCGAAAGAAGCGCCCGGGAAGAT
GACGCCATCAACCGTCTGACGGACTCGAAGTCGAGTCACCGAAAGCTGCT
CAGCGATCCGCGATTCCAGATTCGGCCGCTGCAGCAGGTAATCTCGGCCT
GCACCGGGGCCATGATCACGGCCTGCTTCATGACGCCCCTGGACGTGATC
AAGACTCGCATGCAGTCGCAGCAGTCGCCGGCCCACAAGTGCTTCTTCTA
TTCGAACGGGCTGATGGACCACCTCTTCGCAAGTGGACCCAATGGCTCCG
AGTTGGCGAGCCTGCGGCAAAGACCACAGTTTTCCAGCTCCTGGGATGCT
CTGATGAAAATCAGCCGGCACGAAGGATTGGCCGCTCTTTGGTCCGGCCT
GGGTCCCACCCTCGTCTCCGCCCTGCCCTCCACCATAATCTATTTCGTGG
CCTATGAACAGTTCAAGGCCAGATACCTCCAGATTTACGAGAGCCACTAT
AATAAGAGTCAGGAGCCCCGGCACCTTGAAATCANGGATACCAAGAAAAG
TCTACCGTCGGTGGTTCCCATGATGT
MXO03189.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:36:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2616-PA | 1350 | CG2616-RA | 1..718 | 9..726 | 3571 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2616-RB | 1820 | CG2616-RB | 125..848 | 3..726 | 3594 | 99.7 | Plus |
| CG2616-RA | 1525 | CG2616-RA | 125..848 | 3..726 | 3594 | 99.7 | Plus |
| Shawn-RE | 3255 | CG14209-RE | 1998..2161 | 269..426 | 220 | 76.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7722541..7723222 | 3..684 | 3395 | 99.9 | Plus |
| 3R | 32079331 | 3R | 7723703..7723743 | 686..726 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:34:21 has no hits.
MXO03189.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:36:41 Download gff for
MXO03189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2616-PA | 1..718 | 9..726 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:38 Download gff for
MXO03189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2616-RA | 123..848 | 1..726 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:02 Download gff for
MXO03189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2616-RA | 123..848 | 1..726 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:02 Download gff for
MXO03189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7722539..7723223 | 1..685 | 99 | -> | Plus |
| 3R | 7723703..7723743 | 686..726 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:38 Download gff for
MXO03189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3548261..3548945 | 1..685 | 99 | -> | Plus |
| arm_3R | 3549425..3549465 | 686..726 | 100 | | Plus |
