MXO03190.5prime Sequence
567 bp (567 high quality bases) assembled on 2007-05-24
> MXO03190.5prime
CAGTCGACATGCGTCTTGTCCGCAGTAAATGTTGTCAACGTGATGTTTCT
GTAACCGACTATCTGAACACCCCGCATCCGCACCAGCACCATCCATCGTC
CACCGACGTCCAGCACACCAAAAACATATTTACACGCTACTGGGACGACC
ACATAAGAATGAAGGAATCGAGCGAGGGCAAAACCAGGGCCAAGGCCCCA
TCCGCTGCCGCATCCGCATCCACCACACCATCGTCATCTTCAGCACCTGC
CAAACAAACCCAGAGCGTTACGTTCGTGAGGACCAGTAATGCACCAGCTG
TTTGCGACGCCAACGGGAACGGGAATGGGTGCTCCATCCAAACGGAGTGG
ACATTCCCCCCAAAGGCGCCCACACCGCACATCTACAATTGCCTGAGTCC
GGACATGATGGCCTCAAGTGATAAGAGCAGCTTTAAGGGATTTCGCAAGC
AATTCAGTGGACGGTTCAAGCGCCTAGTTACTCGAAAAGTGGAACACACT
CCAGTGATACCTCCAGAATTGAAGCCGCAACTAAAAACAATATACGTTTA
CGCAAGCTTTCTAGACC
MXO03190.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:36:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11791-PA | 546 | CG11791-RA | 1..543 | 9..551 | 2715 | 100 | Plus |
| CG11791-PB | 396 | CG11791-RB | 1..393 | 159..551 | 1965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11791-RA | 1906 | CG11791-RA | 922..1464 | 9..551 | 2715 | 100 | Plus |
| CG11791-RB | 1299 | CG11791-RB | 331..857 | 25..551 | 2635 | 100 | Plus |
| CG11791-RD | 1721 | CG11791-RD | 754..1279 | 26..551 | 2630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25051164..25051557 | 9..402 | 1970 | 100 | Plus |
| 3R | 32079331 | 3R | 25052482..25052632 | 401..551 | 755 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:31:53 has no hits.
MXO03190.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:36:48 Download gff for
MXO03190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11791-PA | 1..546 | 9..555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:54 Download gff for
MXO03190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11791-RA | 922..1470 | 9..559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:38 Download gff for
MXO03190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11791-RA | 922..1470 | 9..559 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:38 Download gff for
MXO03190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25051164..25051556 | 9..401 | 100 | -> | Plus |
| 3R | 25052483..25052626 | 402..545 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:54 Download gff for
MXO03190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20876886..20877278 | 9..401 | 100 | -> | Plus |
| arm_3R | 20878205..20878348 | 402..545 | 100 | -> | Plus |
