MXO03191.5prime Sequence
891 bp (812 high quality bases) assembled on 2007-05-24
> MXO03191.5prime
CAGTCGACATGGCAAAGTCGACACTTTATGCTGCTGGGGTGACCTGTCTG
GGCTTTATTTGCTTCGCCTTGGCATCTGTGGCCATTGGCATACCCATTTG
GGGTTACTACGATAGTCCATCGGGCGGCTATGACTTCGATCGAGGTTATT
TCGGACCGTTTAAGGTCTGCAAGCAATTGACTTATAATCGCGAGAAATGC
GGCAACGACGTGTCCAAGTTTAGATTAAGTAATGCGGTTTTTGTCAGTGG
ACTCTTGGCCATTGGCAGCTCAGCTGTGCTGGGCATCTTCTGCATTCTGT
CGGTCATTCAACACGCGATGATCTCATCCAGGGAGAAGGTGGTTATGCCC
TACACAACTCTAGTGATAGTGAAGTTAATGTTGGCATTGCTGGCAGGTGT
ACTGGCCATCATAGCGACGGTTTTGTTTGCTCTGCAAATTGATGAGCAGG
AGCGCTATGGCTTCAAGATATCGCGGGGCATTTCCTTCTATATACAGATT
GTGGCTATTGTTTTGACAATTGCTCTGTTCGTGGCCGCCCTGTACGATGT
GATCTACTCGCGCAGTCCAGGCGGAGATCCCACAATGGCGCTGGATGTGT
CATCTCCGGGCAGTGCCACTACGTTCAATAATCCTGGTTTCAAGGAGCCT
CGCAGTCGCAACGGCGTTTCGGTGACGGACGCATCCGGTAAGCCCTACAG
CGGAATCCGGAATGGAGCGGGAACGGCGGGCAGCGTGGCCTCCATGAGCA
CCACCGTGACCAGCGTGTCCAATGGATCCACCCTTGACTCGGTGACTCGT
TCACCGCTGCGATCGAGTCTGAAGAAGCCGAGACCCCGCCGGATCCAACG
TTAGGCATTCAAAATCCCGGCTATTCTGGATCCGGAAGCTC
MXO03191.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:36:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13698-PB | 951 | CG13698-RB | 1..827 | 9..835 | 4110 | 99.8 | Plus |
| CG13698-PB | 951 | CG13698-RB | 831..884 | 838..891 | 270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13698-RC | 1617 | CG13698-RC | 616..1501 | 7..891 | 4375 | 99.7 | Plus |
| CG13698-RB | 2418 | CG13698-RB | 702..1587 | 7..891 | 4375 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18089248..18089646 | 891..494 | 1930 | 99.5 | Minus |
| 3L | 28110227 | 3L | 18090009..18090176 | 399..232 | 825 | 99.4 | Minus |
| 3L | 28110227 | 3L | 18090447..18090564 | 124..7 | 590 | 100 | Minus |
| 3L | 28110227 | 3L | 18090279..18090387 | 231..123 | 545 | 100 | Minus |
| 3L | 28110227 | 3L | 18089846..18089949 | 497..394 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:43:49 has no hits.
MXO03191.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:36:55 Download gff for
MXO03191.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13698-PB | 1..884 | 9..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:36 Download gff for
MXO03191.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13698-RB | 695..1587 | 1..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:05 Download gff for
MXO03191.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13698-RB | 695..1587 | 1..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:05 Download gff for
MXO03191.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18089248..18089642 | 498..891 | 99 | <- | Minus |
| 3L | 18089846..18089946 | 397..497 | 100 | <- | Minus |
| 3L | 18090012..18090176 | 232..396 | 99 | <- | Minus |
| 3L | 18090279..18090386 | 124..231 | 100 | <- | Minus |
| 3L | 18090448..18090571 | 1..123 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:36 Download gff for
MXO03191.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18083548..18083671 | 1..123 | 97 | | Minus |
| arm_3L | 18082348..18082742 | 498..891 | 99 | <- | Minus |
| arm_3L | 18082946..18083046 | 397..497 | 100 | <- | Minus |
| arm_3L | 18083112..18083276 | 232..396 | 99 | <- | Minus |
| arm_3L | 18083379..18083486 | 124..231 | 100 | <- | Minus |
