MXO03193.5prime Sequence
615 bp (542 high quality bases) assembled on 2007-05-24
> MXO03193.5prime
CAGTCGACATGCAAAAAACCAATAACTACAAAAGCTTCAAAATCTTCTTC
AAGAACGTTCCATTTCGTTCATATCCCGACTGCAAGAATGGTAAAGGTTC
AGGCCTAAAAGCCAAGTTGGCAAAGAAAATTCCTATAGAACGTGAAAAGT
TTTTGGGTATAAAGTGTCTGCACGGCAAGAAGATAATTGGCCAGATCAGT
GTTAATAGCGTGATTGGAGGAATGCGAGGACTTCCACTTTTGTTTTGCGA
GACATCCAGCTTGGACAAAAACAAGGGTATTTATTACCGTGGAAAACTGC
TTAAGGATGTGTGTGCCAAACTGCCACGGGTGCAAGAGGGCACACAAGAG
GGCACTCCCGAAGGATGTTTCTTCCTGCTGACCAGCGGATCGATGCCCAC
GAAGAAGGAGGCACAGGAAGTGACCAACGAGTGGCTGAAGCGGGGCTCAG
TTCCGCGCTACTGCCTCCGGATGATCGACTCCATGGACAAGCGGGTGCAT
CCGATGGCCCAATTGTGCGCCGCCAGTGCCTGTCTCAATCCGCAGAGCCA
GTTCGTCGAGGCTTACACCAAAGGGGGCAAGACGTGCAGACTACTGGAAA
TACTCCTACGAGGAT
MXO03193.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:36:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14740-PA | 1437 | CG14740-RA | 1..568 | 9..576 | 2840 | 100 | Plus |
| CG14740-PA | 1437 | CG14740-RA | 565..606 | 574..615 | 185 | 97.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14740-RA | 1600 | CG14740-RA | 99..704 | 9..615 | 2995 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12062124..12062482 | 615..256 | 1735 | 99.4 | Minus |
| 3R | 32079331 | 3R | 12062549..12062756 | 259..52 | 1040 | 100 | Minus |
| 3R | 32079331 | 3R | 12062802..12062846 | 53..9 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:57:09 has no hits.
MXO03193.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:37:02 Download gff for
MXO03193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14740-PA | 1..606 | 9..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:55 Download gff for
MXO03193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14740-RA | 91..704 | 1..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:00 Download gff for
MXO03193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14740-RA | 91..704 | 1..615 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:00 Download gff for
MXO03193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12062124..12062478 | 260..615 | 99 | <- | Minus |
| 3R | 12062549..12062754 | 54..259 | 100 | <- | Minus |
| 3R | 12062802..12062854 | 1..53 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:55 Download gff for
MXO03193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7887846..7888200 | 260..615 | 99 | <- | Minus |
| arm_3R | 7888271..7888476 | 54..259 | 100 | <- | Minus |
| arm_3R | 7888524..7888576 | 1..53 | 92 | | Minus |
