MXO03196.5prime Sequence
932 bp (807 high quality bases) assembled on 2007-05-24
> MXO03196.5prime
CAGTCGACATGTTTAGGAAACTGCTTAAGATGTGGATTCTGCTCCGACCC
ACCCACTGGCTGATCCTGATAGCCCTGTGCGCGGTCACCTGTGCAGGTTA
CTGGTTGCTTTGGTCAGAGATTCGCCTGGAACATGCCTTCAAGCCGCTTT
CCAAGCTGGGCGATTCTCTGAGCCCAGATCAGCATGCCTCGTCCACCACC
GATGACTTTGACTTCGAGGAGCACCTAGTGGTGCTTTACAATCGCGTACC
GAAAACGGGATCCACCAGCTTTGTTAACATAGCATACGATCTGTGCAAGC
CCAATAAATTCCATGTGCTGCACATCAATGTCACTGCCAACATGCACGTC
CTCTCGCTTCCCAATCAAATCCAATTCGTGCGCAATGTTTCCAGGTGGCA
CGAGATGAAGCCAGCTCTTTATCACGGCCACATGGCCTTCCTAGACTTCT
CAAAATTCCAAATCGCCCACAAGCCCATCTACATCAATTTGGTGCGCAAA
CCGCTCGACAGACTTGTCTCCTACTATTACTTTCTACGCTTTGGCGACAA
CTACCGACCGAATTTAGTCCGCAAGAAGGCGGGCAATAAAATTACCTTCG
ATGAGTGCGTGGTGCAGAAACAACCCGACTGTGATCCCAAAAACATGTGG
CTGCAGATACCCTTCTTCTGTGGCCATGCAGCCGAGTGCTGGGAACCCGG
CAGCAGTTGGGCCTTGGACCAGGCCAAGCGCAATCTAGTCAACGAATACT
TCCTAGTCGGAGTCACAGAGCAGATGTACGAGTTTGTGGATCTGCTCGAG
AGATCCCTTCCCAGAATTTTTCACGGCTTTCGTGAGCACTATCATAATTC
AACAAATCTCATCTGCGGGTGACATCTTCCAAGCTTCCGCCCAGCGAATC
GACAATTAAATCCATTCAAAAGACAAAAATCT
MXO03196.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:37:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10234-PA | 1050 | Hs2st-RA | 1..844 | 9..852 | 4195 | 99.8 | Plus |
| CG10234-PA | 1050 | Hs2st-RA | 844..925 | 851..932 | 410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hs2st-RA | 1652 | CG10234-RA | 131..1056 | 8..932 | 4590 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19444109..19444428 | 454..135 | 1600 | 100 | Minus |
| 2L | 23513712 | 2L | 19443634..19443851 | 811..594 | 1090 | 100 | Minus |
| 2L | 23513712 | 2L | 19443912..19444050 | 593..455 | 695 | 100 | Minus |
| 2L | 23513712 | 2L | 19444493..19444620 | 135..8 | 640 | 100 | Minus |
| 2L | 23513712 | 2L | 19443429..19443550 | 932..812 | 560 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:34:27 has no hits.
MXO03196.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:37:18 Download gff for
MXO03196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10234-PA | 1..925 | 9..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:42 Download gff for
MXO03196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hs2st-RA | 135..1067 | 1..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:04 Download gff for
MXO03196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hs2st-RA | 124..1056 | 1..932 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:04 Download gff for
MXO03196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19443429..19443547 | 815..932 | 99 | <- | Minus |
| 2L | 19443631..19443851 | 594..814 | 99 | <- | Minus |
| 2L | 19443912..19444050 | 455..593 | 100 | <- | Minus |
| 2L | 19444109..19444427 | 136..454 | 100 | <- | Minus |
| 2L | 19444493..19444623 | 1..135 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:42 Download gff for
MXO03196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19443429..19443547 | 815..932 | 99 | <- | Minus |
| arm_2L | 19443631..19443851 | 594..814 | 99 | <- | Minus |
| arm_2L | 19443912..19444050 | 455..593 | 100 | <- | Minus |
| arm_2L | 19444109..19444427 | 136..454 | 100 | <- | Minus |
| arm_2L | 19444493..19444623 | 1..135 | 97 | | Minus |
