MXO03201.5prime Sequence
878 bp (764 high quality bases) assembled on 2007-08-28
> MXO03201.5prime
CAGTCGACATGGATCGAGTGACCAAGCCGCAGAAGAAGATGCTCATCACA
CTGCTGCGGGAAACCAAGTACATGGAGGGCAAAAAGGAGAAGGAGTGGTA
TTGGGAGAAGATCCAAGCGGCCCTTAATACTATTGGTCCCAAGAAGACGA
TTATTCAGTGGAAAAAGTGCTGGCGCGATATGCGACTGACCACAAGGAAA
AAGCTGGCGGAACTGAAGCGCTGTCAACTCTCTGGAGGATCTCCACCACC
GGGGATCGAACTAAACCAGGAGGACAACGATATCATCGACATTGTGGGCA
CCGAGTACTTCTACGAGGAGATGAATGGTGAGCTCAAGGCGGAGAACTTC
TTGACCGGCTTGGACTACGCCCCGGAGCATCTGTGCGATGCTATTCTCAC
GGCAGCAGTGGGCCATCACCAGCACAATATGCAGCACCAGAAGGATCCGC
AATCGCATGCAGGGCAACAGCAGCAGCAGGATCATCACACCAACGATGGC
GAAACCAATGATGCTCCTGGATCAAGCAATGGTGGCTCATATCAGGGACA
CCCAGTATCCCAGTTGCAGGCGCACAATGGCAGCGGTGGAGGAGGCGAGC
ATAGCGGCGGTGGTCAATCCCACTCCGGAATGCTCCAGCACCCTGCTTTT
CACGGTGGCTTGCATCCACACCTGTTGAGGCGCCAGCATGGAAGTGGATC
ACTATCCAGAGAGTCGCCATTTGAGGAGAAGCTTCTGCAGTTCATGCAGG
ATGCATTTCCAAAAAAGAGCAAGAAGCGCAAGAACCGGGATCCCGACAAG
CTGTTCCTCTTATCCCTGTACGAAGAGATCAAGAGAGTGCAGGAGGAGAT
ACGCCTTGATGTAAAGTCCGAACTAATG
MXO03201.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:15:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10209-PA | 1506 | CG10209-RA | 1..757 | 9..765 | 3760 | 99.8 | Plus |
CG10209-PA | 1506 | CG10209-RA | 754..819 | 761..826 | 255 | 95.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10209-RB | 2024 | CG10209-RB | 164..1034 | 8..878 | 4325 | 99.8 | Plus |
CG10209-RA | 2024 | CG10209-RA | 164..1034 | 8..878 | 4325 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14847054..14847766 | 878..166 | 3535 | 99.7 | Minus |
2R | 25286936 | 2R | 14847816..14847972 | 167..11 | 785 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:13:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1056..1176 | 395..507 | 161 | 65.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6775..6872 | 399..494 | 150 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2396 | 414..496 | 137 | 67.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6828 | 414..487 | 135 | 68 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2342..2450 | 399..508 | 133 | 60.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2445..2526 | 414..494 | 128 | 63.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2780..2950 | 407..574 | 128 | 56.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2387 | 431..508 | 124 | 65.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6803 | 413..494 | 124 | 62.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2720..2835 | 384..494 | 116 | 60.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2765..2832 | 413..477 | 116 | 67.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6901 | 403..496 | 116 | 61.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1524..1587 | 414..477 | 113 | 64.1 | Plus |
BS | 5142 | BS BS 5142bp | 2042..2145 | 420..521 | 109 | 60 | Plus |
MXO03201.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:15:30 Download gff for
MXO03201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10209-PA | 1..819 | 9..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.3.fasta performed 2008-04-10 09:07:36 Download gff for
MXO03201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10209-RA | 149..1027 | 1..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:30 Download gff for
MXO03201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10209-RA | 156..1034 | 1..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:07 Download gff for
MXO03201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10209-RA | 156..1034 | 1..878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:07 Download gff for
MXO03201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14847054..14847764 | 168..878 | 99 | <- | Minus |
2R | 14847816..14847978 | 1..167 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:30 Download gff for
MXO03201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10734559..10735269 | 168..878 | 99 | <- | Minus |
arm_2R | 10735321..10735483 | 1..167 | 97 | | Minus |