MXO03202.5prime Sequence
884 bp (829 high quality bases) assembled on 2007-08-28
> MXO03202.5prime
CAGTCGACATGTTGAAACTATTTGCTGTGGTGCTCCTGCTGGCCAGCGTG
GCCTTGGCGGTGGAAAACTACGATGGCTACAAGATCTACGACATCAATGC
TCGCAACGCTTTTGAGAAGCAGCTGCTGCTGCGTTTGTCCGGAAATGAGG
CATACGACTTCTTTGACCTGCCCCGTTCCCTGGACGCGTCCAGTCGCGTG
ATGGTCAAGCCCGAGGATCAGGAGGGATTCGAGCACCTGCTGGAGAAGTA
CGGCGTAAACTACTCGGTGATCAACGAGAATTTCGGTGAGTCGCTGCGTC
AGGAGCGCGATGAGAACCAGAACCAGAGGTTGATGAACCTGCGATCCGCT
GAACGCAGCGTTAGCTTCAAGGCGTTCCATCGTCATGCCGAGATCAATGC
CTACCTGGATGAACTGGCTGCTGCCTATCCCAGCCGTGTATCCGTCCAGG
TGGCTGGCAAGTCGTATGAGAATCGTGACATCAAGACCATCACTATCACC
AATGGCGATGGTAAGACCGGCAAGAATGTTGTCTTCCTGGATGCTGGTAT
CCATGCTCGCGAATGGATCGCCCATGCTGGAGCTCTGTATGTGATCCATC
AGCTGGTGGAGAACTTTGCTGCCAACTCGGAACTGCTGAAGGACTTTGAC
TGGGTTATCCTGCCGGCGGTGAATCCCGATGGCTATGAATACTCTCACAC
CACCACCCGTATGTGGCGCAAGACCAGAAAGCCAATCAGCAGTGCCTGCT
ATGGAACCGATGCCAATCGCAACTTCGATTTCCATTGGGGAGAGGTTGGT
GCCTCCAGCTACTCCTGCTCTGATACCTTCAAGGGTGAGACGGCCTTCTC
CGAGCCGGAGACTCAGTTGATTCGCGATATCCTG
MXO03202.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:15:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8560-PA | 1257 | CG8560-RA | 1..876 | 9..884 | 4355 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8560-RB | 1334 | CG8560-RB | 47..922 | 9..884 | 4365 | 99.9 | Plus |
| CG8560-RA | 1566 | CG8560-RA | 279..1154 | 9..884 | 4365 | 99.9 | Plus |
| CG8562-RA | 1483 | CG8562-RA | 501..703 | 486..688 | 295 | 77 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7402811..7403619 | 884..76 | 4030 | 99.9 | Minus |
| 3L | 28110227 | 3L | 7403836..7403903 | 76..9 | 340 | 100 | Minus |
| 3L | 28110227 | 3L | 7398870..7399072 | 486..688 | 295 | 76.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:13:41 has no hits.
MXO03202.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:15:38 Download gff for
MXO03202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8560-PA | 1..876 | 9..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.3.fasta performed 2008-04-10 09:07:39 Download gff for
MXO03202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8560-RA | 279..1154 | 9..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:34 Download gff for
MXO03202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8560-RA | 279..1154 | 9..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:11 Download gff for
MXO03202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8560-RA | 279..1154 | 9..884 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:11 Download gff for
MXO03202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7402811..7403618 | 77..884 | 99 | <- | Minus |
| 3L | 7403836..7403903 | 9..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:34 Download gff for
MXO03202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7395911..7396718 | 77..884 | 99 | <- | Minus |
| arm_3L | 7396936..7397003 | 9..76 | 100 | | Minus |
