MXO03208.5prime Sequence
877 bp (769 high quality bases) assembled on 2007-08-28
> MXO03208.5prime
CAGTCGACATGGATGTATCCCAGTCAGATGGCCCAACAGAAAATGAGGCT
GGCGGAATGAAGAACATTACACATCAGTTCGAGTAGATGTCTAATAGGTT
GAAGGAGCATATGAAATACAACATCCTCCGTAACGCTGTGTTTTACAAGA
AGATTCCCCTGCAGAAGAAACTAAAACTTGCTGTTNAAANAAATATCNNT
CCCCATGCCTATATAATAGTTAACGATACAATCTACAAGTGCCAAGTGTT
CGTACTCCGCATCTACTGCAAGCTGTTTACCAACAACCTCAAGCGGGGTG
ACATAGTCAAGTTTCCCAGGGACGCGATGAGCAATGAGTGCTTTGAATTG
GCCTATACCTGGATGACTAATAATGCGATACATTTGCCACGTGACAAGAT
AATAAATTTGCTCGCGGCCGCAAAATGTTTGCAGTGCATTCCCTTGATCA
AGCGCATCTTTGAGTTTCTTAACGACTACCGAACCCATTGCGAACTTTTT
TCATTTAGCTGCTATTTGAAGGCCAAAGATATGGGTATGACCCAGGTAGC
CGACATGATGGTGTCCAGAGTGACCAAGTCCTTCCTGGTACTAGTGTCCA
ATGGACAGTTCATTAAGATGGATATCGACGGCGCGTGCACTCTGCTGAGA
TCGAGACACTTGGCTGTACAAAACGAGATCGAGATTTTTTATTCAGCTCT
GCTCTGGCTAATATCAAACTATGAGATGCGCATAAAATACATTCCACGTG
TTTTGAGCTTGGTAAGATTTCTTATGATTCCAGCCGTATTTATTCTTCAA
TGGACGAGCAATCTTAAAGATCTCCGACCAGAACTTGCAAATGTCCTATG
CCACTTTCTACACAATGCGATGCTGAC
MXO03208.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10752-RA | 1774 | CG10752-RA | 111..978 | 9..876 | 4221 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12953863..12954537 | 683..9 | 3271 | 98.8 | Minus |
| 3L | 28110227 | 3L | 12953482..12953676 | 876..682 | 960 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:55:13 has no hits.
MXO03208.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:05 Download gff for
MXO03208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10752-RA | 107..978 | 1..877 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:44:11 Download gff for
MXO03208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10752-RA | 107..978 | 1..877 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:44:11 Download gff for
MXO03208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12953480..12953674 | 684..877 | 98 | <- | Minus |
| 3L | 12953863..12954541 | 1..683 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:05 Download gff for
MXO03208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12946580..12946774 | 684..877 | 98 | <- | Minus |
| arm_3L | 12946963..12947641 | 1..683 | 98 | | Minus |
