MXO03211.5prime Sequence
772 bp (703 high quality bases) assembled on 2007-08-28
> MXO03211.5prime
CAGTCGACATGCGTGCCACAGTGTTTTTTCTCGGCCTCTTGGCTATCAGT
TACTGGGAGGAGTCCCATGGTCATGTTGTGCCCGTGGGTCTTCCTGCAGT
CGGAACCTATCTGCTGTCTCCACCCGTTGTCTTGCTAGTCCAGCCACCTC
CTCCTCCGCCGGAAGACGATGGCTCCTACAAGCCGCCTTCGCCCCCCGAA
GATGGCTCGTGGCAGCCACAGCCTGGTCTGGAGGGAGAGTACTCGGACCC
GGAACTAAGCCAGAGTGGCAGTGGAAGCATTACAGCCAGTGACGCAGGAG
CTGCTGCCCTGAGTTTGGTTGCCTCACAATCTGTAGACGCCCAAGATGCC
CCTGCTCCGGCGGAGGCCGGTGGAGCAGGAGGTGCCGGACAAGCGGGACA
GGCTGGAGCACTTCTAGGCGGAGCGGGAGGAGCAGGTGGAGCTGGTGGTG
GAGGCAGCGCTGGAGGCGGTGGCGGCGGAGGAGGCGGCGGCGGTGGCGGA
ACGGCCACATCCGGCCAGAGCGGAGACAGTGGCCAGCCCGGAGCGCCGAG
TCCAGCGGGTCCTCAGCCCGATGGCGAAGATGGCGCTGATGGAGCCGATG
GGCCAGACGGTCCGGATGGCTCCAAGGGTGGAAAAGGCGGCAAGGGTGAA
AAGGGAGCACGCAATGGAGCCGGAGGCGGTGGTGGAGCTGGAGGAGCTGC
TCCCCAGCCGGCGCCGGCAGCGATTCCTGTTCAGGCGGCTGTCCTGATTC
CCGCACCCGTTTGGGCTGATTC
MXO03211.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:16:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4000-PA | 792 | CG4000-RA | 1..762 | 9..770 | 3785 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4000-RA | 999 | CG4000-RA | 70..831 | 9..770 | 3795 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20676459..20677206 | 770..23 | 3725 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:20:46 has no hits.
MXO03211.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:16:05 Download gff for
MXO03211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4000-PA | 1..763 | 9..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.3.fasta performed 2008-04-10 09:07:42 Download gff for
MXO03211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4000-RA | 71..833 | 9..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:19:27 Download gff for
MXO03211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4000-RA | 71..833 | 9..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:08:03 Download gff for
MXO03211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4000-RA | 70..832 | 9..772 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:08:03 Download gff for
MXO03211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20676457..20677205 | 24..772 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:19:27 Download gff for
MXO03211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16502179..16502927 | 24..772 | 99 | <- | Minus |
