MXO03212.5prime Sequence
805 bp (644 high quality bases) assembled on 2007-08-28
> MXO03212.5prime
CAGTCGACATGATGGGTGGCAGTGGTGGCGTTGCTGGTGCGGGCTTTTCC
GCGGGCGCCAGTGGCCCAATGCTGGGTGCTGGAAAGGACATGCTGATGGG
TGGCCAGGGGCATCAGGTGCATCTGCAGCACCAGACGCTCTTGCCCGTCA
AGATGGATAAGCTGGTGCCAAACTATGATAATGCCGAGCATCAAATGAAA
TTTTACAACATCAGATCGCCGCTCGTTCTCAGCTGCAACGTGAAAGACGG
TACGCCGGGCGGCGTGCTCATATGGAAAAAGAACGGCACCGCTGTGACGG
ATGTACCTTCTCTCAGAGGTCGCTTTAAGTTAATCGCAGACGAGAACAAG
TTCATCATCGATAAGACGGATACAAACGACGATGGCAAATACAGTTGCGA
GTTTGACGGCGTGTCCAAGGAAATCGAAGTAATTGCCCGCGTTGTTGTAC
GAGTGCCTTCAAATACAGCCGTTGTGGAGGGTGAAAAGATGTCGGTGACC
TGCAGCGTTGTGGGTACCAAACCAGAGTTGACATGGACCTTTGCCAATGT
AACGCTGACAAATGCCACAGATCGCTTCATTCTCAAACCAGACGATAATG
GTGTTCCTAACGCCATTCTGACACTGGATAATGTGACATTGGACGACAGA
GGCGAATACAAATGCATTGGACGAAATGCGGCCAATGTCTACGGTGGGAA
CACCACCACTCCTGCCAGCGACGTCACAACTGTGCGTGTTAAGGGCAAAT
TTGCCGCCTTGTGGCCTTTCCTTGGCATCTGTGCTGAGGTGCTTAATCTG
TGCAT
MXO03212.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bsg-RG | 8453 | CG31605-RG | 1533..2330 | 8..805 | 3825 | 98.6 | Plus |
| Bsg-RB | 2744 | CG31605-RB | 445..1094 | 156..805 | 3175 | 99.2 | Plus |
| Bsg-RH | 3001 | CG31605-RH | 702..1351 | 156..805 | 3175 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8107237..8107448 | 543..754 | 1030 | 99.1 | Plus |
| 2L | 23513712 | 2L | 8106839..8107000 | 274..435 | 795 | 99.4 | Plus |
| 2L | 23513712 | 2L | 8103355..8103503 | 8..156 | 655 | 96 | Plus |
| 2L | 23513712 | 2L | 8105691..8105810 | 156..275 | 585 | 99.2 | Plus |
| 2L | 23513712 | 2L | 8107065..8107173 | 435..543 | 545 | 100 | Plus |
| 2L | 23513712 | 2L | 8107747..8107808 | 744..805 | 265 | 95.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:21:55 has no hits.
MXO03212.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:25 Download gff for
MXO03212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bsg-RG | 1526..2330 | 1..805 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:20 Download gff for
MXO03212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bsg-RG | 1526..2330 | 1..805 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:20 Download gff for
MXO03212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8103348..8103503 | 1..156 | 93 | -> | Plus |
| 2L | 8105692..8105809 | 157..274 | 99 | -> | Plus |
| 2L | 8106840..8107000 | 275..435 | 99 | -> | Plus |
| 2L | 8107066..8107173 | 436..543 | 100 | -> | Plus |
| 2L | 8107238..8107438 | 544..744 | 100 | -> | Plus |
| 2L | 8107748..8107808 | 745..805 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:25 Download gff for
MXO03212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8103348..8103503 | 1..156 | 93 | -> | Plus |
| arm_2L | 8105692..8105809 | 157..274 | 99 | -> | Plus |
| arm_2L | 8106840..8107000 | 275..435 | 99 | -> | Plus |
| arm_2L | 8107066..8107173 | 436..543 | 100 | -> | Plus |
| arm_2L | 8107238..8107438 | 544..744 | 100 | -> | Plus |
| arm_2L | 8107748..8107808 | 745..805 | 95 | | Plus |
