MXO03213.5prime Sequence
834 bp (779 high quality bases) assembled on 2007-08-28
> MXO03213.5prime
CAGTCGACATGGAGCCGCCAGCGTCGGCCGGAATCGCCGGCTCGACGCAC
AAGTTCCATCCGTGCGACGAGGCTGTGATAGCCACCAACGACGATGCCAG
CGATTGCAAGCGATGTGCGGTGCGCTTGGGCTACTGGAAGGACGACTACA
TCGGGTACTTTGTGCGCAACCAAGAGCGCAAGGCGCCGGAGATCAATCGC
GGCTACTTTGCCCGTGTCAAGGGCGTGGAGATGTGCGTCGAGAAGTTTCT
AAAGAAAACCTCGGGCAACTGCCAGATCATCAATTTGGGCTGCGGCTTCG
ACACACTCTACTTCCGGCTGAGGGACACCGCCCACCAGGTGAAGAACTTC
ATTGAGCTGGACTTCCCCACGGTCACCGCCCGCAAGTGCTACACAATTAA
GCGCAACAAGGCCCTGCTGGCCAGGATTCACGACGAGGATGGTGAGGTGC
GGCTCAGTCCCACGGATCTGCATGGACCAAGCTACCACCTGATGGGCGTT
GACCTGCGCAACCTCGACGAGGTGGACAGCAAGCTGCAGCAGGCAGAAGT
TGATTACTCCCTGCCCACCATATTTCTCGCCGAGTGCGTTCTGGTCTATA
TCGAGGCGCAAAACTGCCGTAACCTGCTCAAATGGATTGCGCAAAAGTTC
CAAGCAGCCGTCTTTGTCAACTACGAACAGGTCAACATGAACGACCGTTT
CGGCGATGTGATGCTCAACAATCTGCGCGGACGCGGCTGCAGCCTGGCCG
GCGTTGAATCCTGCTTGTCGCTGGATACGCAGAGGAACCGCTTCAAGGAC
AGCGGCTGGACTGGCGCCCGCGCCTGGGACATGG
MXO03213.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:16:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3793-PA | 1014 | CG3793-RA | 1..855 | 9..863 | 4250 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3793-RB | 1738 | CG3793-RB | 156..982 | 8..834 | 4135 | 100 | Plus |
| CG3793-RA | 1582 | CG3793-RA | 156..982 | 8..834 | 4135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15764781..15765217 | 253..689 | 2155 | 99.5 | Plus |
| 2L | 23513712 | 2L | 15764375..15764621 | 8..254 | 1235 | 100 | Plus |
| 2L | 23513712 | 2L | 15765270..15765426 | 678..834 | 785 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:13:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doc | 4725 | Doc DMW1DOC 4725bp Derived from X17551 (g8821) (Rel. 29, Last updated, Version 2). | 520..556 | 260..296 | 113 | 78.4 | Plus |
MXO03213.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:16:13 Download gff for
MXO03213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3793-PA | 1..855 | 9..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.3.fasta performed 2008-04-10 09:07:45 Download gff for
MXO03213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3793-RA | 140..972 | 1..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:35 Download gff for
MXO03213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3793-RA | 150..982 | 1..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:12 Download gff for
MXO03213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3793-RA | 150..982 | 1..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:12 Download gff for
MXO03213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15764369..15764621 | 1..254 | 98 | -> | Plus |
| 2L | 15764783..15765208 | 255..680 | 100 | -> | Plus |
| 2L | 15765273..15765426 | 681..834 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:35 Download gff for
MXO03213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15764369..15764621 | 1..254 | 98 | -> | Plus |
| arm_2L | 15764783..15765208 | 255..680 | 100 | -> | Plus |
| arm_2L | 15765273..15765426 | 681..834 | 100 | | Plus |
