MXO03215.5prime Sequence
830 bp (746 high quality bases) assembled on 2007-08-28
> MXO03215.5prime
CAGTCGACATGAATCCGATCAAGGCACAGTCAACGGGCAGTCCCAAGAAA
TTCAACGTATTCGCACACGTCAAGTACGAGCATTTGGTTGCCGGAGTATC
CGGCGGAGTGGTGTCCACACTCATTCTACATCCCCTGGATTTGATCAAGA
TTCGATTCGCAGTTAACGATGGCCGGACAGCTACGGTGCCGCAATACCGG
GGACTGAGCAGCGCCTTCACCACGATTTTCCGGCAAGAGGGCTTCCGCGG
ACTCTACAAAGGCGTCACCCCCAATGTCTGGGGATCGGGCTCCTCTTGGG
GCCTGTACTTCATGTTCTACAACACCATTAAGACATTTATCCAAGGAGGA
AACACGACCATGCCATTGGGCCCCACAATGAACATGCTTGCAGCTGCTGA
GTCGGGAATTCTCACCCTGCTGCTGACCAACCCCATCTGGGTGGTGAAGA
CGCGTCTCTGCCTGCAGTGCGATGCCGCGAGTAGTGCCGAGTACAGGGGC
ATGATCCACGCCTTGGGCCAGATATACAAGGAGGAGGGAATCCGTGGCCT
GTACCGCGGCTTTGTTCCCGGCATGTTGGGCGTCTCCCACGGAGCCATCC
AGTTCATGACCTACGAGGAGCTGAAGAACGCCTACAACGAATATCGCAAA
CTGCCCATCGACACGAAGCTGGCCACCACCGAGTACTTGGCCTTCGCGGC
TGTCTCCAAGCTGATCGCAGCGGCGGCCACCTACCCGTACCAGGTGGTCC
GGGCACGGCTGCAGGACCACCATCACCGATACAACGGCACCTGGGACTGC
ATCAAACAGACTTGGAGGTACGAGCGCATG
MXO03215.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:16:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8026-PA | 1083 | CG8026-RA | 1..651 | 9..659 | 3230 | 99.8 | Plus |
| CG8026-PB | 915 | CG8026-RB | 1..651 | 9..659 | 3230 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45085-RA | 2926 | CG45085-RA | 668..1489 | 9..830 | 4110 | 100 | Plus |
| CG8026-RB | 2926 | CG8026-RB | 668..1489 | 9..830 | 4110 | 100 | Plus |
| CG45085-RB | 1941 | CG45085-RB | 668..1478 | 9..819 | 4055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9188653..9189008 | 672..317 | 1780 | 100 | Minus |
| 2R | 25286936 | 2R | 9188107..9188266 | 830..671 | 800 | 100 | Minus |
| 2R | 25286936 | 2R | 9189067..9189224 | 316..159 | 790 | 100 | Minus |
| 2R | 25286936 | 2R | 9191276..9191429 | 162..9 | 770 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:56:00 has no hits.
MXO03215.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:16:25 Download gff for
MXO03215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8026-PB | 1..651 | 9..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.3.fasta performed 2008-04-10 09:07:49 Download gff for
MXO03215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8026-RB | 661..1488 | 1..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:13 Download gff for
MXO03215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8026-RB | 662..1489 | 1..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:19 Download gff for
MXO03215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8026-RB | 662..1489 | 1..830 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:19 Download gff for
MXO03215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9188107..9188265 | 672..830 | 100 | <- | Minus |
| 2R | 9188654..9189008 | 317..671 | 100 | <- | Minus |
| 2R | 9189067..9189220 | 163..316 | 100 | <- | Minus |
| 2R | 9191276..9191435 | 1..162 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:13 Download gff for
MXO03215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5075612..5075770 | 672..830 | 100 | <- | Minus |
| arm_2R | 5076159..5076513 | 317..671 | 100 | <- | Minus |
| arm_2R | 5076572..5076725 | 163..316 | 100 | <- | Minus |
| arm_2R | 5078781..5078940 | 1..162 | 97 | | Minus |
