MXO03216.5prime Sequence
836 bp (704 high quality bases) assembled on 2007-08-28
> MXO03216.5prime
CAGTCGACATGACGGAAAGCAGCAGTAGCACCAAATCCCGCCTAGCGGTG
GCGCCCACCGGAGTTGGAGGAGCAGCCGAGGGAGCCACATACATACGCAC
CATCGAATGGGACATGATGAACAAGACCAAGTTCTTTCCGCTCTCCATGC
TCAGCTCGTTTTCGGTGCGCTGCTGCCTATTCCCGCTGACCGTGATCAAG
ACGCAATTGCAGGTGCAGCACAAGAGCGATGTGTACAAGGGCATGGTGGA
TTGCGCCATGAAGATCTACCGATCGGAGGGAGTGCCCGGTCTGTATAGAG
GTTTCTGGATCTCCTCCGTGCAAATAGTGTCCGGCGTCTTTTACATAAGC
ACCTACGAGGGCGTGCGCCATGTGCTCAACGATCTGGGTGCTGGGCATCG
AATGAAGGCCCTCGCCGGCGGCGGTTGCGCCTCGCTGGTGGGCCAGACCA
TCATAGTTCCTTTCGATGTGATATCGCAGCACGCCATGGTGCTCGGGATG
TCGGCCCATGCCGGTTCCAAGGGCGATATCAATCCGCTGGGCATTAAGTC
ATGGCCCGGTCGCAGTCGCCTGCACATTTCCATGGACATTGGCAGGGAGA
TAATGCGGCGCGATGGCTTCCGGGGCTTCTACCGCGGCTACACCGCCAGC
CTGATGGCCTACGTACCGAATTCGGCCATGTGGTGGGCCTTCTATCATCT
CTATCAGGACGAACTGTTCCGCATCTGCCCCGTTTGGGTGTCCCATCTGT
TTATCCAGTGCGTGGCCGGCAGTTTAGGTGGCTTCACAACGACAATACTA
ACCAATCCTTTAGATATAGTGCGTGCCCGTCTGCAG
MXO03216.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:16:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5805-PA | 1020 | CG5805-RA | 1..664 | 9..672 | 3320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5805-RB | 2151 | CG5805-RB | 288..1115 | 9..836 | 4140 | 100 | Plus |
| CG5805-RA | 2036 | CG5805-RA | 358..1185 | 9..836 | 4140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24785973..24786672 | 708..9 | 3500 | 100 | Minus |
| 3R | 32079331 | 3R | 24785787..24785915 | 836..708 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:35:31 has no hits.
MXO03216.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:16:34 Download gff for
MXO03216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5805-PA | 1..664 | 9..672 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.3.fasta performed 2008-04-10 09:07:52 Download gff for
MXO03216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5805-RA | 352..1184 | 1..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:35 Download gff for
MXO03216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5805-RA | 353..1185 | 1..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:31 Download gff for
MXO03216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5805-RA | 353..1185 | 1..836 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:31 Download gff for
MXO03216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24785787..24785914 | 709..836 | 100 | <- | Minus |
| 3R | 24785973..24786677 | 1..708 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:35 Download gff for
MXO03216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20611509..20611636 | 709..836 | 100 | <- | Minus |
| arm_3R | 20611695..20612399 | 1..708 | 99 | | Minus |
