MXO03218.5prime Sequence
815 bp (563 high quality bases) assembled on 2007-08-28
> MXO03218.5prime
CAGTCGACATGGAACTGCATTGGCAGCTGCTGACGTTCATCGTGTGCCTC
CAGTTGTTGCATTCCGCCGGATTCATCATTCAGTCGGAAGTGCGCAAGTG
CACGTACGGCCATATCGATAAGCTGCTCCGGATTCGTTGCTACGACTTGG
ACCTCAAGGAGGTGCCACAGAACCTCAAGAGTTCGGTGGAGGTTCTGGAT
CTATCGCACAATCGCATCAGGAAGCTGAAAACTAGCTCGTTTCAGCGATA
CACGGACATTAAGTTTCTGATGCTCTATGATAACATGATCTTATCGGTGG
AGGTGGGAACCTTCGAGCCACTCACCTCGCTCCAGGAAATTGATCTTTCG
AATAATGGACTGACAACGATACCGCTGGAGTTGTTCCAGCTGCCGCGACT
GAGAAACCTATACATCGATAGCAATGAGCTAACATCCCTCAATCTTCAGG
CACTGGAGAAGCCCATTCGTGCTCCACTGGAGTACCTGAACGTGGCAGGT
TGCGAGCTACAGGAGTTACCCGATCTGGGCATACTTCCAAAACTCTGGCA
ACTGAATGCCTCGATGAAATCCGCTGCAGAACTTCAAGATCGACAGCCTG
GCGAATATGTGCCACCTGCAAGTCATCGATCTGACCAAGTCGCAGTTGAG
CCAGTGTGGCTGCCAGCAGGTCACCAACCATCTTATGATGCTCGGCGCCA
GTCCGAAGTTCGTGCCAGTTTGCTTGGAGGCGCTCGACATCCGCGAGTGT
CCACTGCCCTACAATCGAACGATCCATTCGCCAACATTCGCCAGTTGCCA
GACGACACTGCAGTT
MXO03218.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:16:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15658-PA | 1032 | CG15658-RA | 1..640 | 9..648 | 3100 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lapsyn-RA | 1630 | CG15658-RA | 299..1105 | 8..815 | 3985 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21198226..21198434 | 332..540 | 1045 | 100 | Plus |
| 2R | 25286936 | 2R | 21197610..21197795 | 8..193 | 930 | 100 | Plus |
| 2R | 25286936 | 2R | 21198492..21198677 | 541..727 | 855 | 98.4 | Plus |
| 2R | 25286936 | 2R | 21198019..21198165 | 190..336 | 735 | 100 | Plus |
| 2R | 25286936 | 2R | 21198761..21198849 | 727..815 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:40:50 has no hits.
MXO03218.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:16:49 Download gff for
MXO03218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15658-PA | 1..639 | 9..647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.3.fasta performed 2008-04-10 09:07:59 Download gff for
MXO03218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15658-RA | 290..1103 | 1..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:53 Download gff for
MXO03218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lapsyn-RA | 292..1105 | 1..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:41 Download gff for
MXO03218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lapsyn-RA | 292..1105 | 1..815 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:41 Download gff for
MXO03218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21197605..21197793 | 1..191 | 98 | -> | Plus |
| 2R | 21198021..21198164 | 192..335 | 100 | -> | Plus |
| 2R | 21198230..21198434 | 336..540 | 100 | -> | Plus |
| 2R | 21198492..21198677 | 541..727 | 98 | -> | Plus |
| 2R | 21198762..21198849 | 728..815 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:53 Download gff for
MXO03218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17085997..17086182 | 541..727 | 98 | -> | Plus |
| arm_2R | 17086267..17086354 | 728..815 | 100 | | Plus |
| arm_2R | 17085110..17085298 | 1..191 | 98 | -> | Plus |
| arm_2R | 17085526..17085669 | 192..335 | 100 | -> | Plus |
| arm_2R | 17085735..17085939 | 336..540 | 100 | -> | Plus |
