MXO03220.5prime Sequence
874 bp (838 high quality bases) assembled on 2007-08-28
> MXO03220.5prime
CAGTCGACATGCTCAAGTCGGAGGTTCAGCACCAGTTCTGGATTACCAAA
AAGGTGGTGCAGCGCAAGCTCGGAACGAAGGAGGACAAGCACATAATATC
CTCGGACGCGGAGCTGGATTCCAAGATCGAGGTGTTCAAATCGATATCGG
ACACCAGCTTGAACCTGTGCAAAATCATTGACCAATACCAGGAGCGCCTA
TGCATCCTGTCGCAGGAGGAGTGTGTGTTCGGCAGGTTCCTCAAGGAGGC
GGGAAAGCGGAGCAGAACCACGGGCGGTAGTATCGCCCACACGGCCAAGG
CCGTATCCTTCGCTGGACAACAGAGGATGTGCGTGCGGGTGCCGCTCCTG
CGGCTCCAGCACGAAGTCGATGTGTTCCGCTGCCGGGCGATAAAGGACAC
GGAGCAGACCCTCCAGACGATGGAGAAGGAGCGCACGGAATACCGCGCCG
CTCTCTCCTGGATGAAGTCCGCCAGCCAGGAACTGGATCCCGATACGGGC
AAGGGTCTGGACAAGTTTCGCACGGCACAGGCCCACGTGCGGGTGGCCAA
GCATAATTTCGATGGTTACTCAATGGGATTCCATTCAGAAGATTGATTTA
CTAGCAGCTGCCCGATGCAACATGTACTCCCATGCTCTGGTGGCCTACGT
TACCGAGTTGAAGAACTTTGCCCAGAAGGCCGCCTCCACATTCCAGACCA
TATCTAAGGCCTTGATTATAAAGCCCAAGTACGACTTCTGTGTGCTAAAG
GAACTGTCTCAAAATGAANGATCCACAGAGGAAGTGCCGCCAATCGAAGC
CGTGGATAAGGACCAGTCGTTATTCTTTGCTAACGAGTACCAGGACAAGC
TGGAAACCCAGCCGGAAATCAAGG
MXO03220.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:16:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10566-PA | 1236 | CG10566-RA | 1..660 | 9..668 | 3250 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10566-RB | 1462 | CG10566-RB | 79..943 | 9..874 | 4294 | 99.8 | Plus |
| CG10566-RA | 1735 | CG10566-RA | 352..1216 | 9..874 | 4294 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21131797..21132378 | 9..591 | 2865 | 99.8 | Plus |
| 3L | 28110227 | 3L | 21132446..21132687 | 590..831 | 1199 | 99.6 | Plus |
| 3L | 28110227 | 3L | 21132749..21132791 | 832..874 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:35:43 has no hits.
MXO03220.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:16:56 Download gff for
MXO03220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10566-PA | 1..664 | 9..675 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.3.fasta performed 2008-04-10 09:08:02 Download gff for
MXO03220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10566-RA | 352..1216 | 9..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:39 Download gff for
MXO03220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10566-RA | 352..1216 | 9..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:37 Download gff for
MXO03220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10566-RA | 352..1216 | 9..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:37 Download gff for
MXO03220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21131797..21132378 | 9..591 | 99 | -> | Plus |
| 3L | 21132448..21132687 | 592..831 | 99 | -> | Plus |
| 3L | 21132749..21132791 | 832..874 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:39 Download gff for
MXO03220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21124897..21125478 | 9..591 | 99 | -> | Plus |
| arm_3L | 21125548..21125787 | 592..831 | 99 | -> | Plus |
| arm_3L | 21125849..21125891 | 832..874 | 100 | | Plus |
