MXO03223.5prime Sequence
836 bp (649 high quality bases) assembled on 2007-08-28
> MXO03223.5prime
CAGTCGACATGCCGCCCAACGCCCAAGCCGGTGCCCAGTCCATCTCAGAC
TCACTGATCGCAGCAGCTAGTGCCGCCGCCGACGCGGGTCAGAGCCCCAC
CAAGCTGCAGGAGGACTCCACCGGAGTGCTCTTCGAGTGCGATGTGGAAA
CCACCGACGGTGGTCTTGTCAAGGACATCACCGTGATGAAGAAGGCCGAG
AAGCGCCGCCTGAAGCTCGTCTGGCGCAACATCATCGCCTTCGGTTACCT
CCATCTGGCTGCCCTCTACGGAGCCTACCTCATGGTCACCTCTGCCAAGT
GGCAGACGTGCATCTTAGCTTATTTTCTATACGTCATTTCTGGCCTAGGC
ATTACCGCCGGTGCCCATCGTCTGTGGGCGCATCGCTCCTACAAGGCCAA
GTGGCCCCTGCGAGTGATTCTGGTCATCTTCAACACGATTGCCTTCCAGG
ATGCCGCCTACCATTGGGCTCGCGACCATCGCGTCCACCACAAATACTCG
GAGACTGACGCCGATCCCCACAACGCCACGCGTGGTTTCTTCTTCTCGCA
CGTCGGCTGGCTGCTGTGCAAGAAGCACCCGGAGGTGAAAGCCAAGGGCA
AGGGAGTCGATCTATCCGATCTGCGCGCCGATCCAATCCTCATGTTCCAG
AAGAAATACTACATGATTTTGATGCCGATTGCTTGCTTCATCATCCCGAC
CGTGGTGCCCATGTACGCCTGGGGTGAATCCTTCATGAACGCCTGGTTTG
TGGCCACCATGTTCCGCTGGTGTTTCATTCTGAACGTAACCTGGCTGGTG
AACAGTGCTGCCCACAAGTTCGGTGGCCGTCCCTAC
MXO03223.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:17:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5887-PA | 1152 | desat1-RA | 1..828 | 9..836 | 4140 | 100 | Plus |
| CG5887-PC | 1152 | desat1-RC | 1..828 | 9..836 | 4140 | 100 | Plus |
| CG5887-PE | 1152 | desat1-RE | 1..828 | 9..836 | 4140 | 100 | Plus |
| CG5887-PB | 1152 | desat1-RB | 1..828 | 9..836 | 4140 | 100 | Plus |
| CG5887-PD | 1152 | desat1-RD | 1..828 | 9..836 | 4140 | 100 | Plus |
| CG5925-PA | 1086 | desat2-RA | 349..458 | 420..529 | 300 | 90.9 | Plus |
| CG5925-PA | 1086 | desat2-RA | 286..341 | 357..412 | 230 | 96.4 | Plus |
| CG9743-PA | 1263 | CG9743-RA | 579..645 | 497..563 | 135 | 88 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Desat1-RD | 1934 | CG5887-RD | 106..935 | 7..836 | 4150 | 100 | Plus |
| Desat1-RB | 1978 | CG5887-RB | 150..979 | 7..836 | 4150 | 100 | Plus |
| Desat1-RE | 1956 | CG5887-RE | 128..957 | 7..836 | 4150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12445976..12446314 | 317..655 | 1695 | 100 | Plus |
| 3R | 32079331 | 3R | 12444807..12445118 | 7..318 | 1560 | 100 | Plus |
| 3R | 32079331 | 3R | 12446376..12446556 | 656..836 | 905 | 100 | Plus |
| 3R | 32079331 | 3R | 12436763..12437064 | 348..649 | 865 | 85.8 | Plus |
| 3L | 28110227 | 3L | 11023798..11024158 | 355..715 | 350 | 73.1 | Plus |
| 3R | 32079331 | 3R | 30186709..30186806 | 562..465 | 250 | 83.7 | Minus |
| 3R | 32079331 | 3R | 13282904..13283032 | 474..602 | 225 | 78.3 | Plus |
| 3R | 32079331 | 3R | 30197375..30197449 | 563..489 | 225 | 86.7 | Minus |
| 3R | 32079331 | 3R | 12437277..12437356 | 744..823 | 205 | 83.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:12:59 has no hits.
MXO03223.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:17:04 Download gff for
MXO03223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5887-PC | 1..828 | 9..836 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.3.fasta performed 2008-04-10 09:08:05 Download gff for
MXO03223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5887-RC | 185..1020 | 1..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:03 Download gff for
MXO03223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| desat1-RE | 122..957 | 1..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:07 Download gff for
MXO03223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Desat1-RE | 122..957 | 1..836 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:07 Download gff for
MXO03223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12446376..12446556 | 656..836 | 100 | | Plus |
| 3R | 12444801..12445118 | 1..318 | 98 | -> | Plus |
| 3R | 12445978..12446314 | 319..655 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:03 Download gff for
MXO03223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8270523..8270840 | 1..318 | 98 | -> | Plus |
| arm_3R | 8271700..8272036 | 319..655 | 100 | -> | Plus |
| arm_3R | 8272098..8272278 | 656..836 | 100 | | Plus |
