MXO03227.5prime Sequence
891 bp (575 high quality bases) assembled on 2007-08-28
> MXO03227.5prime
CAGTCGACATGGCCATGTACCGCGCCAGTGGGTTAAGGATTATGCAACAG
ATGCGACGCAGGATTCCCGTCGAACTGCAGCCACTCCAAGTGGCCAAAGC
TGCGCCTGCGCTGCAAACTTTCACTTCTCAGCGCTGGACTTCGACGACGA
CGACCAGTGGAAAGCATGCCAGTCCACAGGTTACGACCCCGCCCCCGAGA
CACGACTGGAATAGGGCGGTCAGCGAGGCGGAGCGCATCGTCGGCTATCC
CACATCCTTCCTCAGTCTGCGCTGGCTGCTCAGCGACGAGATCGCCAATG
TGGCGCTGCACCTGCGCAAACTGGTGGGCAGCGCCCATCCGCTGATGAAG
ACGGCCAAGCACCTGCTCTACAATGGCAAGAACACGATGCAAGCCTGGGG
ATTGATAGTGCTCCTGGTGTCCAAGGCCGCAGGACATGCACCCAGTGTTC
CAGACGTGGAGCAGGACAAGAGTGCCGGAGTGCTGCACTCCCAAAGGGCT
TTGGCCGAGGTCACCGAGATGATACGGATATCTCATCTGGTGCACAATAG
CGTGGTTAATCTGCAATCGAGCACGCAGTGCTGGGCAGGATGTGGACACC
TACGACGACATGTCGTTTGGCAACAAGATCGGCCTGCTGACCGGCGACTA
TCTTCTGGGCCATTCCAGTGCGGAGCTGGCTAATCTGCGCAACCAGGAGG
TGGTGGAGCTGATCTCGTCGGCGGTGCGAGATTTTTCCGAGTCAGAATTC
ATTGGAGAGCGTGATGAACAGAACAACCCGCTGCCTTATAAGCCAGGATC
CTTCCAGCGACCATCTCTCAGCGTTGGAGTGGATTTCAACAAGCACGACG
TGATGACGCCCATGCCGATTGCCCAGGTTCTCGGCAATCCG
MXO03227.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:17:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10585-PA | 1347 | CG10585-RA | 1..734 | 9..742 | 3520 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10585-RB | 1699 | CG10585-RB | 103..984 | 9..891 | 4330 | 99.4 | Plus |
| CG10585-RA | 1990 | CG10585-RA | 394..1275 | 9..891 | 4330 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21028308..21028658 | 9..359 | 1755 | 100 | Plus |
| 3L | 28110227 | 3L | 21029085..21029426 | 549..891 | 1605 | 98.5 | Plus |
| 3L | 28110227 | 3L | 21028716..21028905 | 359..548 | 950 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:15:30 has no hits.
MXO03227.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:17:22 Download gff for
MXO03227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10585-PA | 1..734 | 9..742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.3.fasta performed 2008-04-10 09:08:09 Download gff for
MXO03227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10585-RA | 414..1295 | 9..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:36 Download gff for
MXO03227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10585-RA | 394..1275 | 9..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:57 Download gff for
MXO03227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10585-RA | 394..1275 | 9..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:57 Download gff for
MXO03227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21028716..21028905 | 359..548 | 100 | -> | Plus |
| 3L | 21029085..21029426 | 549..891 | 98 | | Plus |
| 3L | 21028308..21028657 | 9..358 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:36 Download gff for
MXO03227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21021816..21022005 | 359..548 | 100 | -> | Plus |
| arm_3L | 21021408..21021757 | 9..358 | 100 | -> | Plus |
| arm_3L | 21022185..21022526 | 549..891 | 98 | | Plus |
