MXO03228.5prime Sequence
843 bp (569 high quality bases) assembled on 2007-08-28
> MXO03228.5prime
CAGTCGACATGTCACTGCCGCGAATCACGGACTTTGAAATTCTCGAGAAA
CTTGGAGCGGGCAGCTATGCGACCGTGTACAAAGAGCGGCACAAAAAACA
GCGCACTTATCATGCCATCAAGTATGTGGAAATGTCGACGTTGTCGCAAA
CCTCGCGGGAAAACCTAATCACCGAAATACGCCTCCTCCGGGAACTCAAG
CACAAGTACATTGTGACCCTGCAGGATTTCTTCTGGGACGACAAAAATAT
TTACATCGTTTTGGAGTATTGCAATGCCGGCAATCTATCCGCTTTTATAC
GAACCAAGAAGGCATTGCCGGAGAGCACCTGTCGCTACTTTTTGCGCCAA
TTAGCTGCCGCTGTGCAGTACATGCGAGCCAACGATGTGTCCCACTTCGA
CCTTAAGCCACAGAACCTGCTGCTTACCCGGGGAGCTAACAATGTGTCCC
TGAAGGTGGCAGACTTTGGGTTTGCTCAGCACCTCAAACTAGGCGAAATC
AATCAACAGCTGAAGGGATCGCCGCTCTACATGGCCCCAGAGATTGTGCG
CAAGCATCAGTACGATGCCAAGAGCGGATCTCTGGAGCATCGGGGTCATC
CTCTACGAATGCCTATTCGGCAAGGCGCCGTATAGTTCGCGAACCATTGA
GGAGCTATTGCTGAGGATTAGGAAGGCCGAGGCCATAACACTGCCACCAA
ACGCTCGGATCAGCAACGAGTGCCATGATCTCTTGCGCCGCCTTTTGGCC
CACGAGCCCACGGCGCGCATTTCGTTTGCAGACTTCTTTGCGCATCCCTT
TCTCGATCTCAAGACGTTTCCCACGGAGCACACTCTGCAAAAG
MXO03228.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:17:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8866-PA | 1563 | CG8866-RA | 1..661 | 9..669 | 3255 | 99.6 | Plus |
| CG8866-PB | 1398 | CG8866-RB | 1..661 | 9..669 | 3255 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8866-RB | 2113 | CG8866-RB | 116..951 | 7..843 | 4130 | 99.6 | Plus |
| CG8866-RA | 1684 | CG8866-RA | 116..951 | 7..843 | 4130 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9333288..9333661 | 843..469 | 1825 | 99.7 | Minus |
| 3R | 32079331 | 3R | 9333719..9333945 | 471..245 | 1135 | 100 | Minus |
| 3R | 32079331 | 3R | 9334294..9334442 | 244..96 | 745 | 100 | Minus |
| 3R | 32079331 | 3R | 9334511..9334599 | 95..7 | 415 | 97.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:08:44 has no hits.
MXO03228.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:17:29 Download gff for
MXO03228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8866-PB | 1..660 | 9..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.3.fasta performed 2008-04-10 09:08:12 Download gff for
MXO03228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8866-RB | 109..951 | 1..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:21 Download gff for
MXO03228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8866-RA | 109..951 | 1..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:59 Download gff for
MXO03228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8866-RA | 109..951 | 1..843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:59 Download gff for
MXO03228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9333288..9333660 | 470..843 | 99 | <- | Minus |
| 3R | 9333721..9333945 | 245..469 | 100 | <- | Minus |
| 3R | 9334294..9334442 | 96..244 | 100 | <- | Minus |
| 3R | 9334511..9334601 | 1..95 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:21 Download gff for
MXO03228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5160233..5160323 | 1..95 | 93 | | Minus |
| arm_3R | 5160016..5160164 | 96..244 | 100 | <- | Minus |
| arm_3R | 5159010..5159382 | 470..843 | 99 | <- | Minus |
| arm_3R | 5159443..5159667 | 245..469 | 100 | <- | Minus |
