MXO03232.5prime Sequence
784 bp (780 high quality bases) assembled on 2007-08-28
> MXO03232.5prime
CAGTCGACATGGACGCCACTAAGAATGGAGAATCCGCCGACCAGGTGGGC
ATCAGGGTGGGCAATCCGGAGCAGCCCAACGATCAAGCAGATGCCCTGGG
CTCCGTGGGATCCGGAGGAGCGGGTAGCAGCGGCCTGGTCGCAGGATCCT
CGCATCCTTACGGCAGCGGAGCCATTGGGCAGCTGGCCAACGGGTACAGC
TCACCCTCGTCCAGCTACCGTAAGAATGTAGCCAAAATGGTCACCGACCG
CCATGCAGCCGAGTACAACATGCGCCACAAGAACCGCGGAATGGCACTGA
TCTTCAACCATGAGCACTTCGAGGTGCCCACCTTGAAGTCTCGCGCGGGA
ACCAATGTGGACTGCGAGAATCTGACTCGGGTGCTCAAGCAGCTGGACTT
CGAAGTGACCGTGTACAAGGACTGCCGCTACAAGGACATTTTGAGGACAA
TCGAGTATGCAGCGTCGCAGAATCACAGCGATAGTGATTGCATCCTGGTC
GCCATCCTGTCGCACGGCGAGATGGGCTACATCTACGCCAAGGACACACA
GTACAAGCTGGATAACATNCTGGAGCTTCTTCACGGCCAATCACTGCCCC
TCGCTAGCCGGCAAACCCAAGTTGTTCTTCATACAGGCCTGCCAGGGCGA
CAGATTGGATGGCGGAGTGACCATGCAGCGTTCTCAGACGGAAACCGATG
GCGACTCCTCGATGAGCTACAAGATTCCAGTGCACGCCGACTTTCTGATC
GCCTACTCGACGGTTCCTGGATTCTATTCGTGGC
MXO03232.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:17:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7788-PA | 1020 | Ice-RA | 1..657 | 9..665 | 3285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drice-RA | 1927 | CG7788-RA | 240..1015 | 8..784 | 3815 | 99.5 | Plus |
| Dcp-1-RA | 1749 | CG5370-RA | 854..1117 | 497..761 | 385 | 77.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29799897..29800672 | 8..784 | 3790 | 99.5 | Plus |
| 2R | 25286936 | 2R | 23552592..23552855 | 497..761 | 360 | 76.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:56:09 has no hits.
MXO03232.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:17:36 Download gff for
MXO03232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7788-PA | 1..662 | 9..670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.3.fasta performed 2008-04-10 09:08:15 Download gff for
MXO03232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7788-RA | 239..1020 | 1..784 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:20 Download gff for
MXO03232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ice-RA | 234..1015 | 1..784 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:25 Download gff for
MXO03232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drice-RA | 234..1015 | 1..784 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:25 Download gff for
MXO03232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29799891..29800672 | 1..784 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:20 Download gff for
MXO03232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25625613..25626394 | 1..784 | 98 | | Plus |
