MXO03238.5prime Sequence
892 bp (796 high quality bases) assembled on 2007-08-28
> MXO03238.5prime
CAGTCGACATGGAGGCCCTAGTGAATTATAGTAGTGAGGACGACCAGGAG
GATGCTGGCTTTCAGATACGGGCACCACAACAACAACAACAACTGCGGCA
TTTGCCGCATGCTAAATCCCCGAAAACAACAACTGATAGCTTATTAAAGC
AGAAGAACAACAATAACTATGGCAGCGGCAACAGTCCGCGCGGCAAGGAA
CGAGAAAGAGAGCGCGAGCGGGAGAGAGAGAAGACAAAGCCGATGTCGCA
GCAGCAGAGTCATAGGAGCAGCAGCAGAGGACGCATTGATGAGGAGCCGA
AGCCCAGCAGTCGCCACCGCCAGGAGCGGGACAAGGACAGGGAACGGGAC
CGCGACCGCGAACGTGACAGGGACAAGGACAAGAAGCGCAGCGATTCAGA
ACGCAGTCGCGACAAAGGACGCGACAAGAATCACAGCAAGGGCGACCATC
GCCACCATCGTACCAAAGACGGCGACAGCCACAGAGAGCGGGAGCGGGAT
CGTGACCGGGAGAGGGAGCGAGATCGCGACAAGGATCGGGACCGTAGGCG
TTCGGAGAAGAGCAGTCGCCACCACAGTGGCAAGGGAACGCCATCATCAT
CATCAACACAACTCATCGTCAGCCGCCGCTGCAGCGGTCAGTGCAGCATC
AGTCCGTCGATCCCATGATGAACGCAGTCGTCGTCGCCGGGACTCTCGAT
CCGGTTCCCGCACACCAACGGGCACGCCGCCCTCTCGTCGCCGCCATCAG
TCGCAACAGTCACGCAAATATCGCGAACGCGACTCCAGCAGCCGCTCCAG
ATCTCCGAAGGAAGAACAAGCCACAACACTTCGCGGTGGAGCTGTGGCCG
GATCTCATATGCTGCTCGCTAAATCAGGCGGCGGAACAGGAT
MXO03238.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:18:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6340-PB | 1542 | CG6340-RB | 1..873 | 9..881 | 4340 | 99.8 | Plus |
| CG6340-PD | 1281 | CG6340-RD | 23..612 | 292..881 | 2925 | 99.8 | Plus |
| CG6340-PA | 540 | CG6340-RA | 1..286 | 9..294 | 1430 | 100 | Plus |
| CG6340-PC | 324 | CG6340-RC | 1..285 | 9..293 | 1425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6340-RB | 1814 | CG6340-RB | 102..984 | 9..892 | 4350 | 99.5 | Plus |
| CG6340-RE | 1831 | CG6340-RE | 102..1001 | 9..892 | 4170 | 97.7 | Plus |
| CG6340-RF | 2177 | CG6340-RF | 750..1347 | 294..892 | 2925 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15485330..15485782 | 439..892 | 2175 | 99.1 | Plus |
| X | 23542271 | X | 15483198..15483421 | 71..294 | 1120 | 100 | Plus |
| X | 23542271 | X | 15485120..15485269 | 292..441 | 750 | 100 | Plus |
| X | 23542271 | X | 15482475..15482538 | 9..72 | 320 | 100 | Plus |
| X | 23542271 | X | 15482855..15482974 | 86..205 | 305 | 87 | Plus |
Blast to na_te.dros performed 2014-11-28 23:20:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 715..865 | 123..277 | 124 | 58.6 | Plus |
MXO03238.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:18:09 Download gff for
MXO03238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6340-PB | 1..873 | 9..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.3.fasta performed 2008-04-10 09:08:22 Download gff for
MXO03238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6340-RB | 93..981 | 1..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:19:32 Download gff for
MXO03238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6340-RB | 96..984 | 1..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:08:10 Download gff for
MXO03238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6340-RB | 96..984 | 1..892 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:08:10 Download gff for
MXO03238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15485122..15485268 | 294..440 | 100 | -> | Plus |
| X | 15483199..15483420 | 72..293 | 100 | -> | Plus |
| X | 15485332..15485782 | 441..892 | 99 | | Plus |
| X | 15482469..15482537 | 1..71 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:19:32 Download gff for
MXO03238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15376502..15376570 | 1..71 | 94 | -> | Plus |
| arm_X | 15377232..15377453 | 72..293 | 100 | -> | Plus |
| arm_X | 15379155..15379301 | 294..440 | 100 | -> | Plus |
| arm_X | 15379365..15379815 | 441..892 | 99 | | Plus |
