MXO03242.5prime Sequence
828 bp (738 high quality bases) assembled on 2007-08-28
> MXO03242.5prime
CAGTCGACATGGATAATTGGAATGTTTTGGCAGCGCAAACCTCCTCGCAG
GCCATCGGACTCCACGACTCTGGCGTGGTGAAGACCCGACTGACCATTGA
GAAGCTGCCGGACAAGGTGCTGCTGCACATCTTCTCGTATCTGTCGCACC
GCGAGATCTGCCGCCTGGCCAGGATTTGCCGACGATGGCGGCAGATTGCA
TACGACACGCGGCTGTGGAAGAACGTGAGCCTGCGACCGGAGGTCTCCGG
ACTGCACGTGGGCTCGCTGGAGATGCTGCTGCAGCTGATCTCGGTGAGAT
TCGGACCGACTCTGCGCTACATCGAGCTGCCCATCGAGCTGATCACGCAC
ACGGTGCTCCACGAACTGTCCGCCAAGTGCCCCAATTTGACCCACATGCT
GCTGGACTTCTCCACAGCCATGCAGCTGCACGACTTCAGCGAGATGCAGG
CCTTTCCCACCAAGCTGCGCTACATGTGCGTCTGCCTCTCGGAGGTGATC
TTCATGGAGGGCTTCATGCGCAAAATCTACAACTTCATCAACGGCCTGGA
GGTGCTGCATCTAATTGGCACGTACGAGAAGTGCGAGGAGGAGGAGGAGG
AGATCTACGAGGTGATCAACGTGCACAAGCTCAAGTCGGCCACGCCCAAT
TTGCGTGTGATCAACCTGTACGGCATCAACTTCATCGATGACTCGCACAT
CGACGCCTTCAGCTCGAACTGCATCCAGCTGGAGTGCCTGGCCGTCAACT
TCTGCAACAAAGTGACCGGCTCCACCCTGAAGACCCTGATCCAGCGTTCC
AAGCGCCTCACCTGCCTGCTCATGAACG
MXO03242.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:18:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2010-PB | 1536 | CG2010-RB | 1..687 | 9..695 | 3385 | 99.7 | Plus |
| CG2010-PA | 1548 | CG2010-RA | 96..699 | 92..695 | 2970 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2010-RC | 2132 | CG2010-RC | 371..1191 | 8..828 | 4105 | 100 | Plus |
| CG2010-RB | 2255 | CG2010-RB | 494..1314 | 8..828 | 4105 | 100 | Plus |
| CG2010-RA | 1910 | CG2010-RA | 233..969 | 92..828 | 3685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29497385..29497797 | 416..828 | 2065 | 100 | Plus |
| 3R | 32079331 | 3R | 29496999..29497324 | 92..417 | 1630 | 100 | Plus |
| 3R | 32079331 | 3R | 29495717..29495801 | 8..92 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:21:02 has no hits.
MXO03242.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:18:29 Download gff for
MXO03242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2010-PB | 1..687 | 9..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.3.fasta performed 2008-04-10 09:08:29 Download gff for
MXO03242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2010-RB | 464..1294 | 1..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:19:39 Download gff for
MXO03242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2010-RB | 484..1314 | 1..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:08:24 Download gff for
MXO03242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2010-RB | 484..1314 | 1..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:08:24 Download gff for
MXO03242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29495707..29495801 | 1..92 | 95 | -> | Plus |
| 3R | 29497000..29497324 | 93..417 | 100 | -> | Plus |
| 3R | 29497387..29497797 | 418..828 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:19:39 Download gff for
MXO03242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25321429..25321523 | 1..92 | 95 | -> | Plus |
| arm_3R | 25322722..25323046 | 93..417 | 100 | -> | Plus |
| arm_3R | 25323109..25323519 | 418..828 | 100 | | Plus |
