MXO03247.5prime Sequence
672 bp (642 high quality bases) assembled on 2007-08-28
> MXO03247.5prime
CAGTCGACATGGAGCTGCTGCAGGCCCTCTGCTGTACGCTGCTCCTGCTT
TTGGCCCGGATGCAAGTTCTGCTTGCCGTCAGTTGGGAGGATTGGTGGAC
ATACGATGGCATCTCAGGACCTGCCTTTTGGGGCCTCATCAATCCGGAGT
GGTCGCTCTGCAACAAGGGTCGTCGCCAATCGCCGGTCAATCTGGAACCC
CAACGCCTGCTATTTGATCCCAACTTGAGGCCCATGCACATAGACAAGCA
CAGGATATCCGGATTGATCACTAATACGGGCCACAGCGTCATCTTTACGG
CCGGCAATGATACGGTGGCCAACTACGACGGTATGCAGACGCCAGTGAAT
ATATCGGGCGGACCGTTGTCGTATCGCTACCGTTTCCACGAGATCCACAT
GCACTACGGATTGAACGACCAATTTGGATCGGAGCACAGTGTCGAGGGCT
ATACGTTCCCGGCGGAGATACAAATATTCGGCTACAATTCCCAGCTGTAT
GCAAATTTCTCAGATGCCCTCAATCGCGCCCAGGGCATCGTCGGTGTCTC
CATTCTGCTGCAGCTTGGAGATCTCTCGAATGCGGAGCTGCGCATGCTCA
CCGATCAGCTGGAGCGCATTCGCTATGGCGGCGATGAAGCCTTCGTTAAG
CGTCTCTCCATCCGCGGACTGC
MXO03247.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:18:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32698-PA | 984 | CG32698-RA | 1..664 | 9..672 | 3295 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:09:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32698-RD | 1775 | CG32698-RD | 489..1152 | 9..672 | 3305 | 99.8 | Plus |
| CG32698-RB | 2007 | CG32698-RB | 721..1384 | 9..672 | 3305 | 99.8 | Plus |
| CG32698-RC | 8207 | CG32698-RC | 698..1361 | 9..672 | 3305 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:09:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9836593..9836806 | 254..467 | 1070 | 100 | Plus |
| X | 23542271 | X | 9836310..9836450 | 114..254 | 705 | 100 | Plus |
| X | 23542271 | X | 9845957..9846067 | 562..672 | 540 | 99.1 | Plus |
| X | 23542271 | X | 9845699..9845796 | 466..563 | 490 | 100 | Plus |
| X | 23542271 | X | 9812099..9812156 | 9..66 | 290 | 100 | Plus |
| X | 23542271 | X | 9832490..9832543 | 65..118 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:09:06 has no hits.
MXO03247.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:19:00 Download gff for
MXO03247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32698-PA | 1..664 | 9..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.3.fasta performed 2008-04-10 09:08:32 Download gff for
MXO03247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32698-RA | 460..1123 | 9..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:03 Download gff for
MXO03247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32698-RA | 476..1139 | 9..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:10 Download gff for
MXO03247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32698-RC | 698..1361 | 9..672 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:10 Download gff for
MXO03247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9812099..9812156 | 9..66 | 100 | -> | Plus |
| X | 9832492..9832542 | 67..117 | 100 | -> | Plus |
| X | 9836314..9836450 | 118..254 | 100 | -> | Plus |
| X | 9836594..9836806 | 255..467 | 100 | -> | Plus |
| X | 9845701..9845796 | 468..563 | 100 | -> | Plus |
| X | 9845959..9846067 | 564..672 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:03 Download gff for
MXO03247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9726525..9726575 | 67..117 | 100 | -> | Plus |
| arm_X | 9730347..9730483 | 118..254 | 100 | -> | Plus |
| arm_X | 9706132..9706189 | 9..66 | 100 | -> | Plus |
| arm_X | 9730627..9730839 | 255..467 | 100 | -> | Plus |
| arm_X | 9739734..9739829 | 468..563 | 100 | -> | Plus |
| arm_X | 9739992..9740100 | 564..672 | 99 | | Plus |
