MXO03248.5prime Sequence
696 bp (649 high quality bases) assembled on 2007-08-28
> MXO03248.5prime
CAGTCGACATGTTGTGGGAGTTCTTCGCCCTATTTGCGATCGCTGCCGCC
TTGTTCTACCGTTGGGCGTCCGCCAACAATGATTTCTTCAAGGATAGGGG
CATCGCCTATGAAAAGCCAGTGCTCTACTTTGGCAACATGGCCGGCATGT
TCCTGCGGAAGAGGGCCATGTTTGACATAGTCTGTGATCTCTACACCAAA
GGCGGAAGTAAGAAATTTTTTGGTATCTTTGAGCAGCGACAACCACTTTT
AATGGTGCGCGACCCAGATCTTATCAAGCAGATAACCATAAAGGACTTCG
ATCACTTTATCAATCATCGCAATGTGTTTGCCACCAGCAGCGATGATGAT
CCACATGACATGAGTAACCTTTTCGGCAGCTCGCTGTTCTCCATGCGAGA
TGCTCGGTGGAAGGATATGCGAAGCACTCTGAGTCCGGCATTTACAGGCA
GCAAAATGCGTCAGATGTTCCAGCTGATGAACCAGGTGGCCAAGGAGGCC
GTGGACTGTCTTAAGCAGGATGATTCAAGGGTTCAGGAGAATGAACTGGA
CATGAAGGACTACTGCACACGATTCACCAATGATGTGATCGCCTCGACAG
CCTTTGGACTGCAAGTGAACTCGTTCAAGGATCGCGAAAATACCTTCTAT
CAGATGGGAAAAAAGCTGACCACATTTACATTCCTGCAGAGCATGA
MXO03248.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:19:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11466-PA | 1551 | Cyp9f2-RA | 1..688 | 9..696 | 3440 | 100 | Plus |
| CG11466-PB | 1308 | Cyp9f2-RB | 1..445 | 252..696 | 2225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:03:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp9f2-RA | 1758 | CG11466-RA | 115..808 | 3..696 | 3455 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:03:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12404408..12404889 | 696..215 | 2410 | 100 | Minus |
| 3R | 32079331 | 3R | 12397372..12397853 | 696..215 | 2245 | 97.7 | Minus |
| 3R | 32079331 | 3R | 12405703..12405914 | 214..3 | 1045 | 99.5 | Minus |
| 3R | 32079331 | 3R | 12398675..12398877 | 209..7 | 880 | 95.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:03:29 has no hits.
MXO03248.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:19:07 Download gff for
MXO03248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11466-PA | 1..687 | 9..695 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.3.fasta performed 2008-04-10 09:08:35 Download gff for
MXO03248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11466-RA | 172..866 | 1..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:08 Download gff for
MXO03248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp9f2-RA | 113..807 | 1..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:32 Download gff for
MXO03248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp9f2-RA | 113..807 | 1..695 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:32 Download gff for
MXO03248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12404409..12404889 | 215..695 | 100 | <- | Minus |
| 3R | 12405703..12405914 | 1..214 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:08 Download gff for
MXO03248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8231425..8231636 | 1..214 | 98 | | Minus |
| arm_3R | 8230131..8230611 | 215..695 | 100 | <- | Minus |
