MXO03249.5prime Sequence
852 bp (817 high quality bases) assembled on 2007-08-28
> MXO03249.5prime
CAGTCGACATGCTGATACTGCTGCCGCTGCTTGGAATTTTTGGTAATGGT
TTCGTTGCTGAAGTCGAGGCAAATCTAAGTCTGGGCTTTAAGGCCATCAA
ATTGCCCAGGCATCCGAATCCGGCCAATTGCAGTGTGGGCAACACAACAT
TCGCACATGGAGTCACATTCAAATTGGATTGTAAAACCCAATGCGTTTGC
GAGAATGGCCGCCACGCCTGCTCCACGCTCTGCCCCAATGAGCAGCTCCC
GGCGCCGGAGGACACGATTTCATGCCGATCGCCGCGCCTCGTCGAAGTTC
CCGGCCACTGTTGCAAGATGTGGCTATGTGAGAATCCAACAGCTGATGTT
TACGCCACCTGCCACAACAGCACCACCAGCGGCAATTGGACGGCCTGCAG
CAGGAGCTGCGGCCTTGGCACCGCCACGCGGCACACCACCACCCACGCGG
GCTGCCATCAACTGAGCAATTTGCGGCTCTGCGAGAATCGCAGGTGCGAC
AAGGACGACCACGAGGACAATAAGTGGAGCAGGAGCCGCCCGTTGACGCA
CAAGCGGAAGCAGCATCGCGCCCACAGCCACTCCCATCAGCGTTATCATC
ACCACAAGGAGCACGAGGAGCCGGCCCACAGGATACGAAAGGGCCACGAG
TGTCGGAGCATCCAGCGCCTAGGTCCTGCCAGGATACGACTGGGCGAGTG
CGTTTCCCGAAAGCTGTATCGACCGAAGCTCTGTGGCCGTTGCCATCGCG
GGGTCAAATGCTGTGCCCCGGCGGTATCCACTACGATACAGGTTGAGTTG
CTGTGTCCTTTAAATGCTGTCGATCCAATTAACTACGTACAGCGACGTCA
AG
MXO03249.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccn-RB | 2778 | CG32183-RB | 551..1394 | 9..852 | 4220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17729583..17729873 | 348..638 | 1455 | 100 | Plus |
3L | 28110227 | 3L | 17730189..17730343 | 639..793 | 775 | 100 | Plus |
3L | 28110227 | 3L | 17723139..17723285 | 202..348 | 735 | 100 | Plus |
3L | 28110227 | 3L | 17715970..17716062 | 9..101 | 465 | 100 | Plus |
3L | 28110227 | 3L | 17721808..17721888 | 123..203 | 405 | 100 | Plus |
3L | 28110227 | 3L | 17738636..17738699 | 789..852 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:55:15 has no hits.
MXO03249.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:08 Download gff for
MXO03249.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccn-RB | 543..1394 | 1..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:44:12 Download gff for
MXO03249.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccn-RB | 543..1394 | 1..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:44:12 Download gff for
MXO03249.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17715964..17716062 | 1..101 | 96 | -> | Plus |
3L | 17716164..17716185 | 102..123 | 100 | -> | Plus |
3L | 17721809..17721888 | 124..203 | 100 | -> | Plus |
3L | 17723141..17723285 | 204..348 | 100 | -> | Plus |
3L | 17729584..17729873 | 349..638 | 100 | -> | Plus |
3L | 17730189..17730341 | 639..791 | 100 | -> | Plus |
3L | 17738639..17738699 | 792..852 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:08 Download gff for
MXO03249.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17709064..17709162 | 1..101 | 96 | -> | Plus |
arm_3L | 17709264..17709285 | 102..123 | 100 | -> | Plus |
arm_3L | 17714909..17714988 | 124..203 | 100 | -> | Plus |
arm_3L | 17716241..17716385 | 204..348 | 100 | -> | Plus |
arm_3L | 17722684..17722973 | 349..638 | 100 | -> | Plus |
arm_3L | 17723289..17723441 | 639..791 | 100 | -> | Plus |
arm_3L | 17731739..17731799 | 792..852 | 100 | | Plus |