MXO03251.5prime Sequence
662 bp (572 high quality bases) assembled on 2007-08-28
> MXO03251.5prime
CAGTCGACATGAACGCCCAACAAGCCCAGCGGGAACATGTCCTCGCCGTC
TCCCGGGACTTTATCTCCCAGCCCCGCTTGACTTACAAGACTGTGTCTGG
TGTGAACGGTCCCCTGGTCATTCTCGATGAGGTCAAGTTCCCCAAGTTCG
CCGAGATCGTGCAGCTGCGTCTGGCTGACGGTACTGTGCGCTCCGGACAG
GTGCTCGAGGTGAGCGGCTCCAAGGCCGTGGTCCAGGTGTTCGAGGGCAC
CTCGGGCATCGATGCCAAGAACACGCTTTGCGAGTTCACCGGCGACATTC
TGCGCACGCCCGTGTCGGAGGATATGTTGGGCCGTGTGTTCAACGGTTCC
GGCAAGCCCATCGACAAGGGACCCCCAATTCTGGCTGAGGATTTCCTGGA
CATCCAGGGCCAGCCCATCAACCCCTGGTCGCGTATCTACCCCGAGGAGA
TGATCCAGACCGGTATCTCGGCCATCGATGTGATGAACTCGATTGCCCGT
GGCCAGAAGATCCCCATCTTCTCCGCCGCCGGTCTGCCCCACAACGAAAT
CGCCGCCCAGATCTGTCGTCAGGCCNGGTCTCGTCAAGCTGCCGGGCAAG
TCCGTGCTGGATGACCACACCGACAACTTCGCCATCGTGTTCGCCGCTAT
GGGTGTGAACAT
MXO03251.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:19:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17369-PB | 1473 | Vha55-RB | 1..567 | 9..575 | 2835 | 100 | Plus |
| CG17369-PA | 1473 | Vha55-RA | 1..567 | 9..575 | 2835 | 100 | Plus |
| CG17369-PB | 1473 | Vha55-RB | 568..653 | 577..662 | 430 | 100 | Plus |
| CG17369-PA | 1473 | Vha55-RA | 568..653 | 577..662 | 430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:03:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha55-RC | 2048 | CG17369-RC | 116..768 | 9..662 | 3245 | 99.8 | Plus |
| Vha55-RA | 2658 | CG17369-RA | 181..833 | 9..662 | 3245 | 99.8 | Plus |
| Vha55-RB | 2722 | CG17369-RB | 245..897 | 9..662 | 3245 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:03:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12625648..12626227 | 662..82 | 2855 | 99.8 | Minus |
| 3R | 32079331 | 3R | 12627449..12627521 | 81..9 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:03:32 has no hits.
MXO03251.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:19:20 Download gff for
MXO03251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17369-PA | 1..653 | 9..662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.3.fasta performed 2008-04-10 09:08:39 Download gff for
MXO03251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17369-RA | 181..833 | 9..662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:11 Download gff for
MXO03251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha55-RB | 245..897 | 9..662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:34 Download gff for
MXO03251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha55-RB | 245..897 | 9..662 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:34 Download gff for
MXO03251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12625648..12626227 | 82..662 | 99 | <- | Minus |
| 3R | 12627449..12627521 | 9..81 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:11 Download gff for
MXO03251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8451370..8451949 | 82..662 | 99 | <- | Minus |
| arm_3R | 8453171..8453243 | 9..81 | 100 | | Minus |
